Basic Information

Insect: Autographa pulchrina
Gene Symbol: -
Assembly: GCA_905475315.1
Location: FR997777.1:11468396-11471509[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.00094 0.098 13.9 1.2 1 23 290 313 290 313 0.92

2 12 0.035 3.7 9.0 2.7 1 19 327 345 327 349 0.92

3 12 9.4e-06 0.00097 20.2 3.0 2 23 355 376 354 376 0.97

4 12 0.06 6.2 8.2 0.1 1 23 380 403 380 403 0.94

5 12 0.045 4.6 8.6 1.1 1 23 406 429 406 429 0.90

6 12 0.00027 0.028 15.6 0.4 2 23 500 521 499 521 0.95

7 12 0.046 4.8 8.6 0.3 2 23 541 563 540 563 0.96

8 12 8.5e-07 8.8e-05 23.5 4.1 1 23 569 591 569 591 0.98

9 12 0.00033 0.034 15.3 2.6 1 23 597 619 597 619 0.98

10 12 0.0013 0.14 13.4 4.5 2 21 626 645 625 648 0.94

11 12 0.84 87 4.6 1.9 1 19 656 674 656 675 0.87

12 12 0.18 19 6.7 2.7 3 19 688 704 687 709 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.00094	0.098	13.9	1.2	1	23	290	313	290	313	0.92
2	12	0.035	3.7	9.0	2.7	1	19	327	345	327	349	0.92
3	12	9.4e-06	0.00097	20.2	3.0	2	23	355	376	354	376	0.97
4	12	0.06	6.2	8.2	0.1	1	23	380	403	380	403	0.94
5	12	0.045	4.6	8.6	1.1	1	23	406	429	406	429	0.90
6	12	0.00027	0.028	15.6	0.4	2	23	500	521	499	521	0.95
7	12	0.046	4.8	8.6	0.3	2	23	541	563	540	563	0.96
8	12	8.5e-07	8.8e-05	23.5	4.1	1	23	569	591	569	591	0.98
9	12	0.00033	0.034	15.3	2.6	1	23	597	619	597	619	0.98
10	12	0.0013	0.14	13.4	4.5	2	21	626	645	625	648	0.94
11	12	0.84	87	4.6	1.9	1	19	656	674	656	675	0.87
12	12	0.18	19	6.7	2.7	3	19	688	704	687	709	0.94

Sequence Information

Coding Sequence: ATGGAAGGTGAGGAGAGTAATTCGAATCCACAGGGTCCTTACCCAATACTGTTCATACCTAAAGTGTGCACACCGCTGGAGACCAACTGCGAGATGTCGGAAAACGTGTTCATACACTTGAACATCTCGTCGCCGGACACGGAAGGTAACGAAACCATTATTTACAAAGGTTTTTGTAACGTTAAAGTTACGAAAACAAATGATATCAACATAAGTTTTGGTGGAACGGACAATGATGCTAAGGATGTCAATATGCCTGTGATTTTGGCTGAGGCTAATCAGATATCATTTCCTGCATACAATGATTCTCAAGTCTGGATTGATCCGGCTAGAAGTCCTTATGTATACAACCGTTGTGACTCCCCACCCCATGAAGCATACACTATCCACGAGTCTCATGACAACCATATAACTATAGAACAGCACAATACATACATAACCCAAAACGTGTACAACTATAATGAGACTGTGCGGTACTCTCCGGTTAGTGAAGAAACGAAAACGGTGAAGAAAGTGCGTACAGACAGCTTTAATATGTACGAAGAGGATGAATTTGAGTGCGGAGTGTTCTTATCCCAGTTGTCCGAAGAGATTATGAATGAGAAGGAGATACGGGAGAGAGATGAGAGGAAGTTTGTTGGTTTGAAGACGGATAATGAGGCGTTGAAACAACTGATGTCTTCTGATATACAGTCTGCATCACGGCAGCAGAAGACTATATTGTTTTTGGGACATGACGCAGAGTATGGACAGACAATACAGAATATATCATTGAATGATCCGTCCGTGGAGTGTCTTGGTAACAGTGATAGGGAGATTGAAGTTACTATTGAGGACTCCAAGTCAATACATCCGCAAGCAAAAAGATATCAGTGCAATAAGTGCAAACAGATATTTGACCAGCTCTTGGAGTTCAAAAAACATATGGTGGGCAACCACCGGCTCTCAAACCTCTGCGACGTTTCAGAAGACGTCAAATTCATGTGCCAAGAGTGTGGGAAGTATTTAAAGAACCAGGACAAGTTTGAGCAACACTGCCTCGGTCACGGCGACCCAGATCTAGAATGTAACAAGTGCCATAAAGTCTTCGCCTCAAAATTCACTCTACGCAATCACCTTAAGATACATAGTCGCAGGTACCCTTGCAGTTACTGCGCTAAGTCGTACCTGACCGCTCAGCAGCTGTACGCGCACGCAGCGAAACTTCACTTCAGATTTATGTGTGATTTTTGTCCGTTTGTTTGTGATAATTATACCGAGTTAAAGGCTCATAAGGACGAGGGTCACCAGGACAGTTCCACTTCAAAAGACTCCACTGAGTCCAGATATAATGAGAATCTCTTTGAGGATATAACAAGTGATGTTCCCTTAGCTGATGAAGTTAAAATGGAAAGGGAGAATCGTATACAATCTGCTGACTCGGTGATATCAAAGGTCATGGCTAATCGGCTATTTCAAGAACTTACTAAGAGTAAGAAGAATCGAAAGTGTAGAAAGGTCTGCGATGTATGCCTGAAGAAGTTTGACCGGATCAGTGACCTTAAGAGGCATCTCATTGAGCACGTGATCAGAAGCACCCTGGCTAAGAACCCCACCAACAAATTTGGAGTCCTGAACATACGATGCGAGATCTGCCAAGAAAAGGTATTTACTAAAGTAGATAGATACAAGGCCCATCTAAGGGAACACGCTAAATTAACGATATACAAATGCACTTTTTGCGATAAATCGTTTAGCGATTCGAGTAACTTTTCAAAACATAAGAAAATTCATGGTTCTACCAACTTTTTCCAATGTGACATGTGTCAAAGGAAGTTTAACTCGAAGAAAATGATTACCCAGCATATGGAATACCATAGGAACCACGGGCCTATTAAATGCCAGTATTGCGACAAGGTGTTCCACTTTGAGTCGATGCTAAACAAACATATTAAGTGCTCGCATTCTAAGGAGTCCAGAAGCAAATTCAAGTGTAGATTCTGTGAGAAATACTTTAAAAGTTTAAAGGAGAAATGGGACCATGAATGGCACATCCATAACGTTAGGAAGGCGATTGTGGATTGCCTGGTCTGTGACTCTAGGTTCAGAAAGTATTCTGAACTGAAGAAGCATTGTACAGAAGAACATGACATACTTATTCCTCCTAAGAAGTTTTTGCGATGGAAATTAAAACGGAAAAATAATTGTAAGGCAGATGGCGAGGCTGGATCCTCTTAG
Protein Sequence: MEGEESNSNPQGPYPILFIPKVCTPLETNCEMSENVFIHLNISSPDTEGNETIIYKGFCNVKVTKTNDINISFGGTDNDAKDVNMPVILAEANQISFPAYNDSQVWIDPARSPYVYNRCDSPPHEAYTIHESHDNHITIEQHNTYITQNVYNYNETVRYSPVSEETKTVKKVRTDSFNMYEEDEFECGVFLSQLSEEIMNEKEIRERDERKFVGLKTDNEALKQLMSSDIQSASRQQKTILFLGHDAEYGQTIQNISLNDPSVECLGNSDREIEVTIEDSKSIHPQAKRYQCNKCKQIFDQLLEFKKHMVGNHRLSNLCDVSEDVKFMCQECGKYLKNQDKFEQHCLGHGDPDLECNKCHKVFASKFTLRNHLKIHSRRYPCSYCAKSYLTAQQLYAHAAKLHFRFMCDFCPFVCDNYTELKAHKDEGHQDSSTSKDSTESRYNENLFEDITSDVPLADEVKMERENRIQSADSVISKVMANRLFQELTKSKKNRKCRKVCDVCLKKFDRISDLKRHLIEHVIRSTLAKNPTNKFGVLNIRCEICQEKVFTKVDRYKAHLREHAKLTIYKCTFCDKSFSDSSNFSKHKKIHGSTNFFQCDMCQRKFNSKKMITQHMEYHRNHGPIKCQYCDKVFHFESMLNKHIKCSHSKESRSKFKCRFCEKYFKSLKEKWDHEWHIHNVRKAIVDCLVCDSRFRKYSELKKHCTEEHDILIPPKKFLRWKLKRKNNCKADGEAGSS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01487965;
90% Identity: iTF_00185604;
80% Identity: -