Apul021485.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Autographa pulchrina
Gene Symbol
-
Assembly
GCA_905475315.1
Location
FR997778.1:7115473-7116756[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 8 8.2e-06 0.00085 20.4 2.1 1 23 180 202 180 202 0.98
2 8 2.4e-05 0.0024 19.0 2.4 1 23 208 230 208 230 0.96
3 8 6.4e-05 0.0066 17.6 2.5 1 23 236 259 236 259 0.97
4 8 1.7e-05 0.0018 19.4 0.3 1 23 266 288 266 288 0.98
5 8 3.2e-05 0.0033 18.5 0.1 1 23 294 316 294 316 0.96
6 8 0.00092 0.096 13.9 5.0 1 23 325 350 325 350 0.93
7 8 0.00083 0.086 14.1 1.3 1 23 356 378 356 378 0.94
8 8 0.0036 0.38 12.1 1.0 2 23 384 405 383 405 0.96

Sequence Information

Coding Sequence
ATGGAGTTCACGGGCTTAATTCTTCCTTTGACGAAGAATATATGTACGGGCTTAATTCTTCCTTTGACGAAGAATATATGTCGCACTTGCCTTCTAGAATCAGACACGACAATGTTTATGAACATACAAGACTTGATTGAGCACGAGATGATTAAGGTTAAATTGATTGATATTTTAGTCTTCCTTAACTGTTTGGAAAACAACGATGAAGAAAACTGGCCTCAAGGGATATGTTCTTCATGCGTATCTACAGCTTTAGTCGCCTATAATTTTAAATTAAACTGTTTAAAGGCTAATACCACTTTGTCACAAATTCTTATGATACAATCTCCTACTAATTTACAGCGCACTGATATTGATTCTATTGATATAAATGTTGTTTATCAAGATCATGAGTATGATGTGCCACTGTTCAGTAATAACCCAACATTAGATTTTGATACCAATTTATCAGCCAGTAAAGAGTTGACACCTTTGCCACCAGTTACTGAAATAACTCTTACTGAGCAACCACCGAGAACTGAAGGAGAAAAAAGATATGCTTGCACTGTCTGTTCTAAATCATTCACCAAGGTGTACAGCCTGCGATACCACATGAATAAGCACTGTGAGATAAGGAAGTACTTGTGTGCTAAATGTGGAAAAAGCTTCCATACATCAAATGGTCTTAATCAACACCTGAAGTCACATAAAGATGTTGCACAATTTAAATGTGGGTTCTGTCAGAAGACATACAGATCAAGGCAGTCTTTGAAGGAGCATTTTCGTGTGGCTCATTCAGGCAACCGCATGTTGTATGTTTGTGTTACTTGTGGCAAGAGATTTACAGCTGGATCAACCTTAAGAAAGCATATTAAGGCTCATAATGGGGAAAACCAATTTCCTTGTCCTAGCTGTCCAAAGATATACACACGGGAGTCATATTTGAGAGCCCATAGCCTGGTCCACACAGGACAGGAGAAGCCAAGACCATTTACTTGTTCACACAAAGACTGTGGAAGATCATTTCCTACTAAACATTCCTTACTTGTGCACACTGCACATACACATAGCTCTGAGAGGCCCCACAAGTGTAAAATTTGTCTGAAGGGGTTTGCTACCTCAACTGGCTTGAGAATACACTCTGAATATCATGCCGGCAAGGAGGTTACATGTAATATATGTGGTAAGAGGCTGAAAAACAAAATAATCTACCAGAGACACAAGAAGATTCATGATGTAGATGCCAATGACATGATTTTAGAAACAGTGGTTGATAATGTATTCTTTGACCAAGCCTACTGA
Protein Sequence
MEFTGLILPLTKNICTGLILPLTKNICRTCLLESDTTMFMNIQDLIEHEMIKVKLIDILVFLNCLENNDEENWPQGICSSCVSTALVAYNFKLNCLKANTTLSQILMIQSPTNLQRTDIDSIDINVVYQDHEYDVPLFSNNPTLDFDTNLSASKELTPLPPVTEITLTEQPPRTEGEKRYACTVCSKSFTKVYSLRYHMNKHCEIRKYLCAKCGKSFHTSNGLNQHLKSHKDVAQFKCGFCQKTYRSRQSLKEHFRVAHSGNRMLYVCVTCGKRFTAGSTLRKHIKAHNGENQFPCPSCPKIYTRESYLRAHSLVHTGQEKPRPFTCSHKDCGRSFPTKHSLLVHTAHTHSSERPHKCKICLKGFATSTGLRIHSEYHAGKEVTCNICGKRLKNKIIYQRHKKIHDVDANDMILETVVDNVFFDQAY