Apul006365.1
Basic Information
- Insect
- Autographa pulchrina
- Gene Symbol
- -
- Assembly
- GCA_905475315.1
- Location
- FR997792.1:4024488-4031237[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.05 5.1 8.5 1.1 1 23 54 77 54 77 0.91 2 17 0.037 3.8 8.9 0.4 2 23 84 105 83 105 0.88 3 17 0.00012 0.012 16.7 0.2 2 20 113 131 113 132 0.96 4 17 0.00026 0.027 15.7 7.9 1 23 148 170 148 170 0.95 5 17 0.00026 0.027 15.7 7.9 1 23 189 211 189 211 0.95 6 17 0.00026 0.027 15.7 7.9 1 23 230 252 230 252 0.95 7 17 0.00026 0.027 15.7 7.9 1 23 271 293 271 293 0.95 8 17 0.00026 0.027 15.7 7.9 1 23 312 334 312 334 0.95 9 17 0.00026 0.027 15.7 7.9 1 23 382 404 382 404 0.95 10 17 0.00026 0.027 15.7 7.9 1 23 423 445 423 445 0.95 11 17 0.00026 0.027 15.7 7.9 1 23 464 486 464 486 0.95 12 17 0.00012 0.012 16.7 5.7 1 23 505 527 505 527 0.95 13 17 0.00026 0.027 15.7 7.9 1 23 546 568 546 568 0.95 14 17 0.00026 0.027 15.7 7.9 1 23 587 609 587 609 0.95 15 17 0.00026 0.027 15.7 7.9 1 23 628 650 628 650 0.95 16 17 0.00026 0.027 15.7 7.9 1 23 669 691 669 691 0.95 17 17 2.5e-05 0.0026 18.9 0.1 1 23 696 718 696 718 0.98
Sequence Information
- Coding Sequence
- ATGAGCCTACAGATTAATGTCGATGTCAAGAGTGGTGACATTGACCTCTTACTGACCTTGACCTTGGAGTATGTGACATTGACCTTGAGGATACATCGTCGCGTCCACCAGAACCGCGGCGGCGGTAACTCGCGATCTCGCGCGCGATCCTCGGACAGGTACGAGTGCGACTGCTGCAGCGAGACCTTCAACAGGCGCGAGAAACTCTGGGAACATAAAGCGGAAGCTCACCGCGGCGCCATGACAGTTCGGTGCGAGGTGTGCCGGAAGTGCTTCGAGGATGACGCGGAACTGGCTGAGCACGATCTAACGCATACCGCGGACGAGAGAGCCGGTCGCTGTCGCCAGTGCGGGTTAACGTTCCCGCGCTACGAGCAGCTGCGGCGGCACATGGCGTGCGCGCACGGCGCCGCGCCCGCGTCCGGCTCCGGCCGCCTCCCGCACGCCTGCAACCAGTGCGGCAAGCGCTTCGGCCACGCGCACTCGCTCACACGACACATGCACAACCACGCCAAGCAGCTGTACCGCTGTGTCGTCTGCAAGGTGAGTGAGTTAGCGCTCCCGCACGCCTGCAACCAGTGCGGCAAGCGCTTCGGCCACGCGCACTCGCTCACACGACACATGCACAACCACGCCAAGCAGCTGTACCGCTGTGTCGTCTGCAAGGTGAGTGAGTTAGCGCTCCCGCACGCCTGCAACCAGTGCGGCAAGCGCTTCGGCCACGCGCACTCGCTCACACGACACATGCACAACCACGCCAAGCAGCTGTACCGCTGTGTCGTCTGCAAGGTGAGTGAGTTAGCGCTCCCGCACGCCTGCAACCAGTGCGGCAAGCGCTTCGGCCACGCGCACTCGCTCACACGACACATGCACAACCACGCCAAGCAGCTGTACCGCTGTGTCGTCTGCAAGGTGAGTGAGTTAGCGCTCCCGCACGCCTGCAACCAGTGCGGCAAGCGCTTCGGCCACGCGCACTCGCTCACACGACACATGCACAACCACGCCAAGCAGCTGTACCGCTGTGTCGTCTGCAAGGTGATGCGGCAAGCGCTTCGGCCACGCGCACTCGCTCACACGACACATGCACAACCACGCCAAGCAGCTGTACCGCTGTGTCGTCTGCAAGGTGAGTTAGCGCTCCCGCACGCCTGCAACCAGTGCGGCAAGCGCTTCGGCCACGCGCACTCGCTCACACGACACATGCACAACCACGCCAAGCAGCTGTACCGCTGTGTCGTCTGCAAGGTGAGTGAGTTAGCGCTCCCGCACGCCTGCAACCAGTGCGGCAAGCGCTTCGGCCACGCGCACTCGCTCACACGACACATGCACAACCACGCCAAGCAGCTGTACCGCTGTGTCGTCTGCAAGGTGAGTGAGTTAGCGCTCCCGCACGCCTGCAACCAGTGCGGCAAGCGCTTCGGCCACGCGCACTCGCTCACACGACACATGCACAACCACGCCAAGCAGCTGTACCGCTGTGTCGTCTGCAAGGTGAGTGAGTTAGCGCTCCCGCACGCCTGCAACCAGTGCGGCAAGCGCTTCGGCCACGCGCAGTCGCTCACACGACACATGCACAACCACGCCAAGCAGCTGTACCGCTGTGTCGTCTGCAAGGTGAGTGAGTTAGCGCTCCCGCACGCCTGCAACCAGTGCGGCAAGCGCTTCGGCCACGCGCACTCGCTCACACGACACATGCACAACCACGCCAAGCAGCTGTACCGCTGTGTCGTCTGCAAGGTGAGTGAGTTAGCGCTCCCGCACGCCTGCAACCAGTGCGGCAAGCGCTTCGGCCACGCGCACTCGCTCACACGACACATGCACAACCACGCCAAGCAGCTGTACCGCTGTGTCGTCTGCAAGGTGAGTGAGTTAGCGCTCCCGCACGCCTGCAACCAGTGCGGCAAGCGCTTCGGCCACGCGCACTCGCTCACACGACACATGCACAACCACGCCAAGCAGCTGTACCGCTGTGTCGTCTGCAAGGTGAGTGAGTTAGCGCTCCCGCACGCCTGCAACCAGTGCGGCAAGCGCTTCGGCCACGCGCACTCGCTCACACGACACATGCACAACCACGCCAAGCAGCTGTACCGCTGTGTCGTCTGCAAGGCGTCATTCGCTCGAGCGGACCAACTAGCGCAACATCTGAACAGTCACCTCGCGAACTACAAGCGACTGAAGCCGTAA
- Protein Sequence
- MSLQINVDVKSGDIDLLLTLTLEYVTLTLRIHRRVHQNRGGGNSRSRARSSDRYECDCCSETFNRREKLWEHKAEAHRGAMTVRCEVCRKCFEDDAELAEHDLTHTADERAGRCRQCGLTFPRYEQLRRHMACAHGAAPASGSGRLPHACNQCGKRFGHAHSLTRHMHNHAKQLYRCVVCKVSELALPHACNQCGKRFGHAHSLTRHMHNHAKQLYRCVVCKVSELALPHACNQCGKRFGHAHSLTRHMHNHAKQLYRCVVCKVSELALPHACNQCGKRFGHAHSLTRHMHNHAKQLYRCVVCKVSELALPHACNQCGKRFGHAHSLTRHMHNHAKQLYRCVVCKVMRQALRPRALAHTTHAQPRQAAVPLCRLQGELALPHACNQCGKRFGHAHSLTRHMHNHAKQLYRCVVCKVSELALPHACNQCGKRFGHAHSLTRHMHNHAKQLYRCVVCKVSELALPHACNQCGKRFGHAHSLTRHMHNHAKQLYRCVVCKVSELALPHACNQCGKRFGHAQSLTRHMHNHAKQLYRCVVCKVSELALPHACNQCGKRFGHAHSLTRHMHNHAKQLYRCVVCKVSELALPHACNQCGKRFGHAHSLTRHMHNHAKQLYRCVVCKVSELALPHACNQCGKRFGHAHSLTRHMHNHAKQLYRCVVCKVSELALPHACNQCGKRFGHAHSLTRHMHNHAKQLYRCVVCKASFARADQLAQHLNSHLANYKRLKP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -