Apul004267.1
Basic Information
- Insect
- Autographa pulchrina
- Gene Symbol
- Zfa
- Assembly
- GCA_905475315.1
- Location
- FR997762.1:3625751-3654191[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.058 6 8.3 6.9 1 23 458 480 458 480 0.99 2 11 0.00031 0.032 15.5 1.2 3 23 488 508 486 508 0.96 3 11 0.00027 0.028 15.6 1.7 1 23 514 537 514 537 0.96 4 11 0.015 1.5 10.1 3.3 1 21 543 563 543 565 0.95 5 11 0.00063 0.065 14.5 1.9 2 23 652 673 651 673 0.98 6 11 7.8e-06 0.0008 20.5 4.5 1 23 679 701 679 701 0.98 7 11 0.0077 0.8 11.1 0.5 1 23 709 732 709 732 0.96 8 11 0.034 3.5 9.0 3.4 2 23 739 760 738 760 0.96 9 11 0.00049 0.05 14.8 2.6 1 23 766 788 766 788 0.98 10 11 1e-05 0.001 20.1 1.4 1 23 794 817 794 817 0.95 11 11 7.4e-06 0.00076 20.6 4.0 1 23 831 853 831 853 0.97
Sequence Information
- Coding Sequence
- ATGTCCCGAGGTACGGACGGGGATATCAAGGTTTACCCAAATTACAGAAAGATTGGAAGGGTGGATTCTCACAGAGGCACCATCCACTTAGACATCCTGGTTGGTCAAGAGATCCCGGGCGACCGGGATACTGGCGAGATTAGCGACACGGGCGACCTGCCGGACACGAGCGACATTCCTGACACAAACGATATTCCTGACACCGGCGATATTCCTGATTCTAGCGAGCTTCCTGATTCGAGCGAGCTTCCCGACTCAAGTGAGCTACCCGACTCAAGCGAGATCCCTGACACAATCGCCATCAGTGACACTGGAGATATAACCGACCCAGGCGAGATTTCTGACGGAGGCGAGATTTCTGACGCCGTCGAAATATCTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGACACCGGCGATATTACCGACACGGGCGATATTACCGATACCGGTGATATAACCGATACGGGCGAGATTAGCGATACGCAGAAGCCTGAAGTTACCGGGAACACCCTGGATGCCCCTGAGGATACTGTAGCCAAGCAAGTCATGGAGATTGCAGATGAGACCATGCCTCATGAACAGGATAAAGACAAGCCACCGGAGAAGGAGAAACCAACCTTCATACAGACGTACATGAATCAAGCTGCGACTACCACTGTCATCGCATTGAACGAGCCAGAAGAAGACGTTGACACCAGCGGCGTGACTTACTTCGTTGATGAAGAGGGCAGGTACTACTACCAGCCAGCCGGGGTCAATCAGAGCCTGGTCTCGCTGTCCACCACCACCGTCAACGATGGAACTGAGGCCGTCGGCGAGCCGGCGACTGAGAGCTACCAGACCGTCACCCTGGTGCCCTCGGAGTCGAGCACCGGCGAGGTCAGCTACGTGCTGGTCGTGCAGGAGGAGAGCAAGCCCGTCGTCAACGTCAACGTCAACATGGACGTGGAGCCGGTATGTACTTACACCTTCAGCTGGCAGCCCGCGACGCTGGTGCCCTCGGAGTCGAGCACCAGTTCCCGAAGAGCTGCAGCACACGTCGCCGAGGACCCCAAGGCCAACGATGACGTTTACAACTTCGACGAGGAAGAGGAGGCCGTCCAGGAGGATTTGGACGAGCAAGCCGACGCTAAGGGCGCGGCCAAGAGCAACAAGCCTCGCGTCAACAACTTGCGCACACGGTTCACGTGCAACTTCTGCACCTACAACACCCACCGCCGCTACCTGCTGTACCGTCATCTCAAGACTCACTCTGAGGACCGTCCGCACCTGTGCAAGGTGTGCGAGCGCGGCTTCAAGACGGTGGCCTCGCTACAGAACCACCTCAACATGCACAACGGCATCAAGCCGCACGTCTGCAAGTACTGCAGCAGCCCATTCACTACTTCTGGCGAGCTGGTCCGCCACGTCCGCTACAAGCACACGCACGAGAAGCCGCACAAGTGCACCGAGTGCGACTACGCCTCCGTCGAGCTGTCCAAGCTGCGGCGGCATATCCGCTGCCACACTGGCGAGAGGCCCTACCAGTATACTCAAACACAACTGAATTTTAAGTCGCGGTCTCTCTTCGTCCCTTTAGTCCTACTACTGGTCAAAATAGCTAAAGAACATAACATACCATCACGCCTGTATCCCCGAAGGGTTAGGCAGAGGTGTACCAATGTACACCCACAGTTCGCCGACCTTAGTCTGGCGTCCGATCTTGAGAGCCAGCTCCCTCTCTTGGTGGCCCGAGTCGGGATCGTGTACCGCGAGGTGGCGGATCAATGCCCTCACTGCACGTACGCGTCGCCGGACACGTTCAAACTGAAGCGCCACCTGCGCACTCACACCGGCGAGAAGCCGTACAAGTGCGAGCACTGCGGCATGTGCTTCACGCAGTCCAACTCGCTGAAGGCTCACAAGCTGATACATAACGTGTCCGAGAAGCCAGTGTACGCTTGCGAGCTGTGCCCGGCCAAGTGCGGGCGCAAGACCGACCTGCGCATCCACGTGCAGAAGCTGCACACTTCGGACAAGCCGCTCAAGTGCCGACGCTGCGGGAAGGCCTTCCCCGATCGCTACTCGTGCAAGGTGCACAATAAGACTCACGAGGGTGAGAAATGCTTCAAGTGCGAGCTGTGCCCGTACGCTTCGACCACCATGCGTCACCTGAAGACCCATATGCTGAAGCACACCGACGAGAAGCCGTTCGCTTGCGAACTCTGCGATCAGTCGTTCAGGCAGAAGCAGCTGCTCCGCCGCCACCAGAACTTATACCACAACCCTAGCTACGTGCCCAAGCCGCCGAAGGAGAAGACCCACACTTGCCACGAGTGCAACCGCATGTTCGCCCACAAGGGCAACTTGATCCGCCACCTCGCGGTACACGATCCCGACTCGGGCCACCAACAGAGGGAGCTGGCTCTCAAGATCGGACGCCAGACTAAGGTCAAGTTAATCGATGGAGAGATTATAAAGGACATGCGTAGCCCGCAGAGCCCTAACGGACCGGGCACAAACCTGATGAAGATCGAGCTCGGCAACAAGGAGCTGAAGCGCGGCGAGCTGGTCACCGTGGCCGACGGCGACGGCCAGCAGTACGTGGTGCTGGAGGTCATCCAGCTGGAGGACGGTACCGAGCAGCAGGTCGCAGTCGTCGCCCCGGAGTTCATCGACCCCGAAGATGAGGGCGAGGAGGAGGATTTGGAAGATGAGGACGAGGAGGAAATCGAGGAGAGGAAGTTCAGAGTGAAGGAGACGGCGGCCGAGCGCAGCATCAAGCTCGAGAAGGAGGTCGACACGTGCTTCGGCTTTGATGAGGAAGACGAAGAAGAGGAACTTGAGGAGCACGGCTTCGCAGCCAAGGGCGTCATGGGTCTAGTTTAA
- Protein Sequence
- MSRGTDGDIKVYPNYRKIGRVDSHRGTIHLDILVGQEIPGDRDTGEISDTGDLPDTSDIPDTNDIPDTGDIPDSSELPDSSELPDSSELPDSSEIPDTIAISDTGDITDPGEISDGGEISDAVEISXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDTGDITDTGDITDTGDITDTGEISDTQKPEVTGNTLDAPEDTVAKQVMEIADETMPHEQDKDKPPEKEKPTFIQTYMNQAATTTVIALNEPEEDVDTSGVTYFVDEEGRYYYQPAGVNQSLVSLSTTTVNDGTEAVGEPATESYQTVTLVPSESSTGEVSYVLVVQEESKPVVNVNVNMDVEPVCTYTFSWQPATLVPSESSTSSRRAAAHVAEDPKANDDVYNFDEEEEAVQEDLDEQADAKGAAKSNKPRVNNLRTRFTCNFCTYNTHRRYLLYRHLKTHSEDRPHLCKVCERGFKTVASLQNHLNMHNGIKPHVCKYCSSPFTTSGELVRHVRYKHTHEKPHKCTECDYASVELSKLRRHIRCHTGERPYQYTQTQLNFKSRSLFVPLVLLLVKIAKEHNIPSRLYPRRVRQRCTNVHPQFADLSLASDLESQLPLLVARVGIVYREVADQCPHCTYASPDTFKLKRHLRTHTGEKPYKCEHCGMCFTQSNSLKAHKLIHNVSEKPVYACELCPAKCGRKTDLRIHVQKLHTSDKPLKCRRCGKAFPDRYSCKVHNKTHEGEKCFKCELCPYASTTMRHLKTHMLKHTDEKPFACELCDQSFRQKQLLRRHQNLYHNPSYVPKPPKEKTHTCHECNRMFAHKGNLIRHLAVHDPDSGHQQRELALKIGRQTKVKLIDGEIIKDMRSPQSPNGPGTNLMKIELGNKELKRGELVTVADGDGQQYVVLEVIQLEDGTEQQVAVVAPEFIDPEDEGEEEDLEDEDEEEIEERKFRVKETAAERSIKLEKEVDTCFGFDEEDEEEELEEHGFAAKGVMGLV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -