Apul022035.1
Basic Information
- Insect
- Autographa pulchrina
- Gene Symbol
- Zfa
- Assembly
- GCA_905475315.1
- Location
- FR997787.1:1463460-1477658[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.0024 0.25 12.6 1.5 1 23 258 280 258 280 0.99 2 11 0.012 1.3 10.4 1.6 1 23 287 309 287 309 0.97 3 11 3.1 3.2e+02 2.8 1.5 1 7 313 319 313 324 0.91 4 11 2e-05 0.0021 19.2 3.6 1 23 342 365 342 365 0.95 5 11 0.012 1.3 10.4 3.7 2 23 372 394 371 394 0.95 6 11 2.6e-06 0.00027 22.0 0.2 1 23 407 429 407 429 0.97 7 11 0.0017 0.18 13.1 0.6 1 22 435 456 435 460 0.93 8 11 4.1e-06 0.00043 21.3 1.1 2 23 469 491 468 491 0.96 9 11 7.2e-06 0.00075 20.6 0.3 1 23 497 520 497 520 0.97 10 11 3.9e-05 0.004 18.3 0.7 1 23 529 551 529 551 0.98 11 11 0.005 0.52 11.6 0.3 1 19 557 575 557 580 0.92
Sequence Information
- Coding Sequence
- ATGGATGAAAAGTCTAGTTCTAGTTGGGACCATGTTAATAAGGAACAAAAATCGGAATGGACGAAAACCTATTGTTTTGGTTGTTTGAGTGATAACAGAGAAGAAAATGTACATAATTATGCATTTCAATGTGGACCGCTAAAGGAAATATTCCAGATGGATTGTGTACCTCTTTGTCACTTGTGCAAGAGAATGGCTCAGCGGACAGAAATGTTTATACAAAATGTACAGAGCAACCACATATTACTGGAAAACTTTCAAAACGTAATAGATGAAACCCTAAGCTCAGTCCGCTCACAAACACAGCCACTAGTCAATCTTACCACAACACCACTCGACACGATAGAGTTAGTTGAGAATGGCCCGTGTACCGAGGAGGTGTTCTCCGTGATGTACTCCTCGAACATGCGGACTGAGTTCCAGGTTAAAGTGGAAATGAAGGAGGAGGAGCTGTTTGATGAACTTGAAGCGGAGTTCATTGGTGGCGATGAGTTTTCAGAATCATGTGTTAAAGAAGAAGATGAATTTCCATTGAAAGCGCTACTGAAGGAAGAATTGGAATTAGAAGACATTGAAGGTTTGGACCTCATGAGCTTAAGTGCAACTCTCAAAAAGAACAAACTTAAGAAGAAACATAAAATAAAGAATGAAGATTCTGAAAAGAAAATAAAAGATGTCAACCTAAAAGTAAAAACAGTATATTTAACGAAACAACAATGTTTGGACGAGCGGCCGCGGTTGGCTCAGGACCCTAAATATCTAGGCTGTGCATATAAGTGTGAGAATTGTATAAAAGGATTCAGTTTCAAAGGCAGCTACGATAAACATATGGAGAGACACAATCGGTGTATGGGCGACCACGAATGTGATATATGCAAGCAGAGAATGGATTCCGAAGAAAAACTTATGAGCCATATGAGATATCATTTAATTCGCTACAAATGTCCCGAGTGTGGTTTGATCCGAAACTGCCGCGGGACCATACTAGATCATTACGTCGTAGACCACTGTCAGGGGTTCAACCACACTTGTCCACACTGCGCTAAGAATTTCAGACGTCGCGGCTCGCTCCGGCGTCACGTGATGTACGCGCACAGTTCCCGCGCTCGCGTGACGTGCGCTCACTGCCACAAGCACTACGCCAACACAGAGGTGCTACGCTCGCATATGATCATTAAACATGCAAAAGAGGTATCAGCGGGTGAGGTGAGCAAGAAGTACGTGTGCCAGGAGTGCGGCAAGGCCTTCAAGGCGCCGTCCCAGCTGCGGAACCACAGCATCAAGCATTCTGATAACAGGGACTACTACTGCGTCGAGTGTGATAAAAGTTTTAAATCGGACGCCATATTGAAAAACCATTTAAAGACTGCATCCAAACATGTCAATTATTTAGAATTACCGTTACCGTGCCCACACTGTGAGAAACGGTTCTCAATTCGCCGCGACCTAGAGCGACATATGAACAGGATACATCTCAACATCAAGCCTTATACTTGTGATCGATGTGATAAGGCATACACAAACTCTTGGGGCCTGAAGGACCACCAGCGGTTAGTCCACGAGGGGTACAAGAGACCCCTACAGTTCCCCTGTACCATGTGTGACAAGGTTTTTGATCGCACTCAGATCCTTAAAAGTCACATCCGCACCCACACAGGGGAACGACCGTACCAGTGTCCCAAGTGTCCCGCACAGTTCAGCCAGTCCAGCATCCTCAGGACACACGACAAGCTCATACACCTCAAGCTCACCAGGGATGGCAGGCCTAAGGCCAAATAG
- Protein Sequence
- MDEKSSSSWDHVNKEQKSEWTKTYCFGCLSDNREENVHNYAFQCGPLKEIFQMDCVPLCHLCKRMAQRTEMFIQNVQSNHILLENFQNVIDETLSSVRSQTQPLVNLTTTPLDTIELVENGPCTEEVFSVMYSSNMRTEFQVKVEMKEEELFDELEAEFIGGDEFSESCVKEEDEFPLKALLKEELELEDIEGLDLMSLSATLKKNKLKKKHKIKNEDSEKKIKDVNLKVKTVYLTKQQCLDERPRLAQDPKYLGCAYKCENCIKGFSFKGSYDKHMERHNRCMGDHECDICKQRMDSEEKLMSHMRYHLIRYKCPECGLIRNCRGTILDHYVVDHCQGFNHTCPHCAKNFRRRGSLRRHVMYAHSSRARVTCAHCHKHYANTEVLRSHMIIKHAKEVSAGEVSKKYVCQECGKAFKAPSQLRNHSIKHSDNRDYYCVECDKSFKSDAILKNHLKTASKHVNYLELPLPCPHCEKRFSIRRDLERHMNRIHLNIKPYTCDRCDKAYTNSWGLKDHQRLVHEGYKRPLQFPCTMCDKVFDRTQILKSHIRTHTGERPYQCPKCPAQFSQSSILRTHDKLIHLKLTRDGRPKAK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00185541; iTF_00327312; iTF_01221876; iTF_01487956;
- 90% Identity
- iTF_00185541;
- 80% Identity
- -