Apul028459.1
Basic Information
- Insect
- Autographa pulchrina
- Gene Symbol
- -
- Assembly
- GCA_905475315.1
- Location
- FR997763.1:7938846-7943817[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.1 11 7.5 0.4 2 23 229 251 228 251 0.93 2 12 1.5 1.6e+02 3.8 0.2 6 23 261 278 259 278 0.91 3 12 5.6e-05 0.0058 17.8 1.4 1 23 312 335 312 335 0.94 4 12 8.8 9.1e+02 1.4 0.2 5 23 344 362 343 362 0.93 5 12 0.0004 0.041 15.1 1.3 1 23 368 390 368 390 0.98 6 12 3.7e-05 0.0038 18.3 2.0 1 23 398 420 398 420 0.97 7 12 0.00031 0.032 15.4 1.6 1 23 429 452 429 452 0.97 8 12 0.00022 0.022 15.9 0.2 1 23 458 480 458 480 0.97 9 12 5.6e-06 0.00058 20.9 2.2 3 23 488 508 486 508 0.98 10 12 0.00037 0.039 15.2 1.0 1 23 513 535 513 535 0.98 11 12 2.9e-06 0.0003 21.8 4.2 1 23 541 563 541 563 0.97 12 12 0.00017 0.018 16.3 2.7 2 23 570 592 569 592 0.95
Sequence Information
- Coding Sequence
- ATGGCTGTGAGTGTTAATGATTTGTGTAGATTATGTGCTAAGAAAGTTTTCGACGAGTTCTCTAAAGATCTACTGGATGAAAGCAATAGAAATGTTTTAAAAATAATACAAGATTTTCTACAAATTATCATATTTGACACTGACAATATGCCTACCAAGATTTGCCTGAACTGTGAAGAAAAAATTATTTCATTTCAACTGTTTAGTCTTGAATGTTATAAAGTTCAAGAAACTCTTAAAAAGATGTATGAAGACTGTTCTAAAACTTGTGACATCAAGCTGGAACTTACAAAATTTAATGATTTTGGAGGTCCAATAAAATCTGAGGTTAAAGATGAAGTGTCTGCAGAAGACTTTGTTAGTGCATTAAACAATGAACAGTCATTATCTGAGATAGATTTGTACACANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTTATTAGAAGATGTTGCTATAGCAACATTAAAATCAAGAAAACATAAACGTATTAAGAGGAAAGAAATCACTGAAGAACAAACAGAGGAATTAAATCAAATTCTTAAAAAAGGAAATTTTACAGTAAAAGATTTAGTTAAATTGGAATGTAATTTCTGTTCTGAGAAGCAAAAATCATGGAGCGAATTACGACTACATTATGCTGTAAAACATAAAAGTAAACCATTTGCTTACTGTCTGTGTGGTTTTGTTGTGAGATCTAAAAGTGTTCTTTATAAACATGTAGCAGATCATAAGCTAGAAAGTAGAAAAGCGATCAAGAATAATCCTGAACTTTTAGCTGAAAGACAAGACATGAAATGTTTAAATGTTAATGTCAAAGATTTTATAAGGTTTATGTGTCCCAACTGTGATAAGGAATGTTCGAGCTGGTATACTTTAAAGGCTCATAGTGAAAGACTTCATAAAGTACCACCGGTAGTGTCTTGTATGTGCGGTATTATTCTTAAGTCCAAGTCAGTCATGTACAAACACGTACAAGATCATAGAAATCCCAATGTGTTTTCATGCGACAAATGTCCGCGCATAACAAAAACCCTAACTGCCTTAAATAAACATAAGATGAGGCACATACCAAAATCGGAAAGAAAGTTTTGTTGTGCATCTTGTGATAAAATATTTACTTCAAAGGATGCATTAAAATCACATGCTAGATCTCACATACCTATAGAAGAACGTAAAATATATCACTGTGAAATTTGTAATATGAAGTTTACGACTCGTTCGTCGGCAGCGTCGCACAAGCGCGTGGTGCACGACAAGATCAAGGGCTACGTGTGTGACCTGTGCGGGTACGCGTGCGGCACTAACGGCGAGCTGCGACAACATCGGGCCATACACAGCGATGAGAAGCCATTCGGCTGTAGGAAGTGTCCGAAACAATTTAAGACTTATTCAAACCTGAAGACTCATATGGATACTCATGAGGACACTTCGTACGAGTGTTACATCTGCAGGCGGGTGTTGAACAGCCGCCGGACGCTTCGCAAACATCTGCTGGTGCACGAGGACAAATGCAGACATGTCTGTTCCTACTGCAATAAGGCTTTTAAGAGAAGGCAGACGCTTAAGGTGCACATGTACACGCACACGGGCGACAAGCCGCTGTCGTGCAAGTGGTGCGACGAGCGCTTCTCGTACGCGTCGACGCTGCGCTCGCACCGCCTGCGCTGCCATCCCGACAAGATGGCGCACGCGCACGACTCCTTCAACAATTACGGACAGATTGCTTTGCAACAGGATTACATCAAGAACGATGTGCCGGTTGTGAACATTCCAGTTGCGAAAAACGAAGTCGAGGCTATTTAA
- Protein Sequence
- MAVSVNDLCRLCAKKVFDEFSKDLLDESNRNVLKIIQDFLQIIIFDTDNMPTKICLNCEEKIISFQLFSLECYKVQETLKKMYEDCSKTCDIKLELTKFNDFGGPIKSEVKDEVSAEDFVSALNNEQSLSEIDLYTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLLEDVAIATLKSRKHKRIKRKEITEEQTEELNQILKKGNFTVKDLVKLECNFCSEKQKSWSELRLHYAVKHKSKPFAYCLCGFVVRSKSVLYKHVADHKLESRKAIKNNPELLAERQDMKCLNVNVKDFIRFMCPNCDKECSSWYTLKAHSERLHKVPPVVSCMCGIILKSKSVMYKHVQDHRNPNVFSCDKCPRITKTLTALNKHKMRHIPKSERKFCCASCDKIFTSKDALKSHARSHIPIEERKIYHCEICNMKFTTRSSAASHKRVVHDKIKGYVCDLCGYACGTNGELRQHRAIHSDEKPFGCRKCPKQFKTYSNLKTHMDTHEDTSYECYICRRVLNSRRTLRKHLLVHEDKCRHVCSYCNKAFKRRQTLKVHMYTHTGDKPLSCKWCDERFSYASTLRSHRLRCHPDKMAHAHDSFNNYGQIALQQDYIKNDVPVVNIPVAKNEVEAI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01487936;
- 90% Identity
- iTF_00185549;
- 80% Identity
- -