Basic Information

Insect: Autographa pulchrina
Gene Symbol: su(Hw)
Assembly: GCA_905475315.1
Location: FR997782.1:4958246-4965226[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.0017 0.18 13.1 0.2 1 20 32 51 32 52 0.95

2 12 0.0001 0.011 17.0 4.6 1 23 151 174 151 174 0.97

3 12 0.0046 0.48 11.8 0.8 2 23 182 204 181 204 0.96

4 12 5.4e-06 0.00056 21.0 0.6 1 20 209 228 209 230 0.95

5 12 2.2e-07 2.3e-05 25.3 0.6 1 23 241 264 241 264 0.97

6 12 0.82 85 4.7 2.0 1 23 300 322 300 322 0.96

7 12 0.032 3.3 9.1 0.2 1 23 327 349 327 349 0.98

8 12 9.1e-07 9.5e-05 23.4 1.1 1 23 355 377 355 377 0.98

9 12 6.5e-05 0.0068 17.6 0.6 3 23 382 402 380 402 0.95

10 12 0.88 91 4.6 0.1 8 23 420 435 409 435 0.89

11 12 1.1e-05 0.0012 19.9 2.1 1 23 441 463 441 463 0.99

12 12 1.2 1.2e+02 4.2 0.2 3 23 471 494 470 494 0.83

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.0017	0.18	13.1	0.2	1	20	32	51	32	52	0.95
2	12	0.0001	0.011	17.0	4.6	1	23	151	174	151	174	0.97
3	12	0.0046	0.48	11.8	0.8	2	23	182	204	181	204	0.96
4	12	5.4e-06	0.00056	21.0	0.6	1	20	209	228	209	230	0.95
5	12	2.2e-07	2.3e-05	25.3	0.6	1	23	241	264	241	264	0.97
6	12	0.82	85	4.7	2.0	1	23	300	322	300	322	0.96
7	12	0.032	3.3	9.1	0.2	1	23	327	349	327	349	0.98
8	12	9.1e-07	9.5e-05	23.4	1.1	1	23	355	377	355	377	0.98
9	12	6.5e-05	0.0068	17.6	0.6	3	23	382	402	380	402	0.95
10	12	0.88	91	4.6	0.1	8	23	420	435	409	435	0.89
11	12	1.1e-05	0.0012	19.9	2.1	1	23	441	463	441	463	0.99
12	12	1.2	1.2e+02	4.2	0.2	3	23	471	494	470	494	0.83

Sequence Information

Coding Sequence: ATGCCACCTAAGCGCAAGAGAGGACGGCCGCCGGGGTCCAAGAAAAAGATTGTTTTTAAAGATAAATCAAAACCCATTTCTGAAAAGATTAGTTATGTTTGTAATGTTTGTTATAAGTCCTTCTCAACAGGAAAAGCGTTATTATCCCACAGGGGTTGCCAGAAGGGCTTAGGATGGTTAGATATGGTTTCCTCTAAGTCAAGAGTACGAGTCAGAAGAGTACGCACAACGTTGGCCGAGTCCTGGGGCCCGAGTCTGCTATTTACACTCCGCAACAGTGCGCTCACAGTTGCATCGTCCGGCGGCGCTCGGGCCCTCTCGGGTGCACTCGGGCTGGTTCGGGCGCGACTCGTGCGCGTTCGGGCGGCCCGAACCGGCCCGAGTGCACCCGTGAGGGCCCGAGCGCCGCCGGACGATGCAACTGTGAGCGCACTGTTGCGGAGTGCAGCCTTCAGTTGCAAGAAGTGCTCCAAAAAATTTACATTTAAGGACAGTTTCAAAGAACACCTGCGTCAGGAACATTCTGAATTGCCTGATGCTGTTGAGTGTGACCAGTGCAATGTCCGGTGTCCTGATAAACCTACACTGGTTAAACATATCCAGAAATTTCACGAGAGAGAGATATTTAATTGTCCAAAATGCGGAAAGCAATTTGTCAGGCGATCTCATGTATTGCGACACATGGCCCAAAGTGGATGCAATGGCCAAAAAGTTTCTCGATTTGTGTGTGAAATATGCAATACCAAGTTTTCAAGAAAAGACAATCTGATGGTGCACATCCGACTGCAGCATATTGTTCAAAATGAACACTATTGCAAAAGCTGTATGTTTAGTTCAAAAAGCTTTTCAAAGTTGGTAAATCATTGGCATCAATTTCATTCAGAATCACCTAATCAATATCAGTGTCACCACTGTATGAGATGGACGAGCTCCCGAGCCGCCATGATCAAGCATTTGGAGATACATGGGGAGAAGAAATATTCATGTGCCGTGTGCGGCTACAGCACGTTCACGATCGAGGTGATGCAGCGACACGTCCTGACGCACGTGGAGGACAAGCCCTACAAGTGTGAGCAATGCGACAAGTCGTACATCCAGCGCGCGCAGCTGCAGCGCCATCTCGACAAACACGAGGGCCACCTGTGCCCCGTATGTAAACTAAGTTTCGAGACAAAGGCTAAGTTAATGATTCACATCAGAGAACACTACGGGCTAGAGAAATTATATTGTCCTGTTAAGATGTGTGCTTACTCTAAAAGAGAATTCATCAATGAAGCCAGCTTCACGAATCATTTGAAGATGCATGTTGACGAGAAACAGTTCAAATGCGACGTGTGCCGGAAGGCGTTCCACTCGGAGGTGAACCTGCGGCGGCACCTGGAGACGCACACGCTGGACCGGCCGCGCCGCTGCATGTACTGCGTGTCGGCGCGAGCCTACGTGCGCGGCGAGCAGCTCATCCGACACGTGCGCAAGCTGCACCCCGACATCTTCAAGACGCATCTGCAGCACGTGCGACAAGTGCTGGGTTTCAATGTTTCCATGGACAGAGTAAAAAAGAGTGAAATGGATTCTATACTCAACCTATTGGATGCTGAGTCGGAACGTATCCTTCAAGGGTACGGTGGGTCAGGCGTGCTCTACGGCGGATATATGCAGGACGAAAAAGCCAGCCCTAGTACTGAACAGCAGGAGAAGGGCGAAAACAGTCCACTAATGTCGGAGGAGGAACTTACAGAAAACTTGACAAAGCTTCTTTCGCAACTCATTGACAAAGAAACACTTGAACTTTTCGGTTGGCCAGAAAAAAGTGTGGATGTGGTATTGGAAAAAGTGATCACTCAATGCGGTGCGAAGCCGGCCGACCGCGACAAGTGGACTCGCGTGCAGCGGCTGCGCGAGAACTCCAAGCACTTGTTCCTGTACGTGATCGAAGACGAGAATATCGCGCGCATGCTCGACACGCACACCATCGACCAGATCGTCAAGCACATCCTCAAGCAAGTCAGCGAGGATGACGACGGCGAAACTGCCGCCGACAAATAG
Protein Sequence: MPPKRKRGRPPGSKKKIVFKDKSKPISEKISYVCNVCYKSFSTGKALLSHRGCQKGLGWLDMVSSKSRVRVRRVRTTLAESWGPSLLFTLRNSALTVASSGGARALSGALGLVRARLVRVRAARTGPSAPVRARAPPDDATVSALLRSAAFSCKKCSKKFTFKDSFKEHLRQEHSELPDAVECDQCNVRCPDKPTLVKHIQKFHEREIFNCPKCGKQFVRRSHVLRHMAQSGCNGQKVSRFVCEICNTKFSRKDNLMVHIRLQHIVQNEHYCKSCMFSSKSFSKLVNHWHQFHSESPNQYQCHHCMRWTSSRAAMIKHLEIHGEKKYSCAVCGYSTFTIEVMQRHVLTHVEDKPYKCEQCDKSYIQRAQLQRHLDKHEGHLCPVCKLSFETKAKLMIHIREHYGLEKLYCPVKMCAYSKREFINEASFTNHLKMHVDEKQFKCDVCRKAFHSEVNLRRHLETHTLDRPRRCMYCVSARAYVRGEQLIRHVRKLHPDIFKTHLQHVRQVLGFNVSMDRVKKSEMDSILNLLDAESERILQGYGGSGVLYGGYMQDEKASPSTEQQEKGENSPLMSEEELTENLTKLLSQLIDKETLELFGWPEKSVDVVLEKVITQCGAKPADRDKWTRVQRLRENSKHLFLYVIEDENIARMLDTHTIDQIVKHILKQVSEDDDGETAADK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01487957;
90% Identity: -
80% Identity: -