Basic Information

Insect: Autographa pulchrina
Gene Symbol: -
Assembly: GCA_905475315.1
Location: FR997789.1:5422276-5444205[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 0.018 1.9 9.9 0.3 2 23 494 515 493 515 0.96

2 18 0.0066 0.69 11.3 0.0 1 23 525 548 525 548 0.95

3 18 0.16 16 6.9 2.0 1 21 668 688 668 689 0.94

4 18 0.036 3.7 8.9 3.8 2 23 752 773 751 773 0.95

5 18 0.5 51 5.4 0.6 1 23 785 809 785 809 0.90

6 18 0.00013 0.014 16.6 0.3 2 23 816 839 815 839 0.97

7 18 0.07 7.3 8.0 0.2 1 23 845 867 845 867 0.93

8 18 0.0034 0.36 12.2 2.9 1 23 873 895 873 895 0.98

9 18 2.3 2.4e+02 3.3 0.3 2 20 906 924 906 926 0.90

10 18 0.045 4.6 8.6 0.2 1 23 1005 1027 1005 1027 0.97

11 18 2.1 2.2e+02 3.4 7.2 1 23 1034 1056 1034 1056 0.95

12 18 0.0014 0.14 13.4 1.8 1 23 1091 1114 1091 1114 0.95

13 18 0.00023 0.024 15.8 0.7 1 23 1121 1144 1121 1144 0.98

14 18 0.0039 0.4 12.0 0.2 2 23 1166 1188 1165 1188 0.96

15 18 0.014 1.4 10.2 3.4 3 23 1206 1227 1205 1227 0.95

16 18 0.00085 0.088 14.1 1.7 3 23 1265 1285 1263 1285 0.96

17 18 0.00012 0.013 16.7 0.1 1 23 1291 1313 1291 1313 0.97

18 18 0.00039 0.04 15.1 0.7 3 23 1321 1342 1319 1342 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	0.018	1.9	9.9	0.3	2	23	494	515	493	515	0.96
2	18	0.0066	0.69	11.3	0.0	1	23	525	548	525	548	0.95
3	18	0.16	16	6.9	2.0	1	21	668	688	668	689	0.94
4	18	0.036	3.7	8.9	3.8	2	23	752	773	751	773	0.95
5	18	0.5	51	5.4	0.6	1	23	785	809	785	809	0.90
6	18	0.00013	0.014	16.6	0.3	2	23	816	839	815	839	0.97
7	18	0.07	7.3	8.0	0.2	1	23	845	867	845	867	0.93
8	18	0.0034	0.36	12.2	2.9	1	23	873	895	873	895	0.98
9	18	2.3	2.4e+02	3.3	0.3	2	20	906	924	906	926	0.90
10	18	0.045	4.6	8.6	0.2	1	23	1005	1027	1005	1027	0.97
11	18	2.1	2.2e+02	3.4	7.2	1	23	1034	1056	1034	1056	0.95
12	18	0.0014	0.14	13.4	1.8	1	23	1091	1114	1091	1114	0.95
13	18	0.00023	0.024	15.8	0.7	1	23	1121	1144	1121	1144	0.98
14	18	0.0039	0.4	12.0	0.2	2	23	1166	1188	1165	1188	0.96
15	18	0.014	1.4	10.2	3.4	3	23	1206	1227	1205	1227	0.95
16	18	0.00085	0.088	14.1	1.7	3	23	1265	1285	1263	1285	0.96
17	18	0.00012	0.013	16.7	0.1	1	23	1291	1313	1291	1313	0.97
18	18	0.00039	0.04	15.1	0.7	3	23	1321	1342	1319	1342	0.95

Sequence Information

Coding Sequence: ATGTCGGAGACACAACCCCCATTAATTCTCTGCATGGAGAATGCTGCGGGTGAAGATGTGGCTCTTAAAATAGAGCCTGATGATAATTTTCAGGCTTTTCTGGATAAAGCTAAATCACTCCTAGGCTTCGATGTAGACCTAAACTCTATAACGAGAAACCAGCCGGTCTCACTAACAGACAATGTCTACCAATTCCTAATAAACGCCGAACAAAATCTACAACAAGATGAACTATCGCAAAACTTTGACCCAATGTTGGACCCAAACGATGGCGCCAACGATTTGGTCTATATCTTGGACGATGGCACTCAAATAAGAGCTTCGCAGATACATTTTGATAATGATGATCCTTTAATAGACTTAACAGCAGAGAAAATACCGTTTGTTAAGTACGCTGATGATGTGACAGACGTTTTGGAGGAAGATAACATTAATGTACAAGAAACTAAAAAGATTAATATAGTTGAGAGTCCCGTTTCTCGTTGGTCGAGTAAAAATTCGAGTCCAAAATGCAGTTTTGTTAATTCATTACCTTTTAAACTAGTCTGTAATAACACTTCTGGTTTCGAAGCCCAATTCACGAAATATTTAGAAGCGAACACAGCTAAAACGTACGCGACATTGAACCCTGTGACAGCTAGGAATAAGTCTCCAAAAAGCTTAATAAAAGACAACTTTAAGAACTACGATGATAATTATCAAAGGAACGACAACTTGTCTTACACTAGAGAGGATATTTTGAACATGTTTAAAGACTCGCCTATGACGTCACTGCCGTATGACCAGGGGTATGGGGAGAGGAGACATGTTAGGAAGACAGACCCGTCGAGACTCGTCCATAAGAGTTGGAATAAACCTATATCCTATGTCGATATAGATGGAGTTCTAATAGGGGAAAGTGAGAGCCAAATATGTTTTATATGCGGTAAACATGTGGACAACAGTGTAGATAAATTATATCTCTTCGATAATGAAGATCAAAGGCTTCACAGATGTTCGCCACAGAAAAAAATGTCGACACAATTGAAAATTATATGCGAATGCTGTCTCAACGAGAATTTTAAGCCATGCAGAATGAAAAGCGCCAACCAGTTTCTTAACCCCGACGAATTCTTAGTCATCAGAAACAATCAACAGTACATCTTTCAAAAGATCAAAAATTTCAGTTTCACGCATTTGGGTAAAGCTAAGGACATCATAACCAAGATAGAGTCTAAAGTCGCAGATAAAGAAGAGTTTGTTAAAGTTGAGATTGGCTCTGACGGGGAAATTATAACCAAGCCCATAGACAATGATCCGAGGTCTGATGACGTCATCATAGTGAAGGACGAGAAGAAGGACGGTAGCTCTAGTGATGTAGAGATTATAGAACCGGAACCAGAAATAGATAATATCATAGACAATTTGGAGGAGGCTGATGAGGAGGTGAAGGAGTTTTTGGGGAAGTACCAGTGTGATAGCAGTGAAGTTACGGAACTTAAGTGCAGATTCTGTGAGAAAATATTCGTGGACCTATCGGAAGTGACGGAGCACTCTGAGACACATAAACACGAGCTAGAAGATGGTGAAGTGTTTCCCTGTCCTCTATGTAACTATGGATATGCAAATCTAAAATGGCTGAAAGGTCACTTAAAAGCTGCACATGAAAAAACGGAATCTAGTAATAAAGAAGATGACCAAATTAAAGAGGAGAATGAAGGCGACTCTCAGACATCGCCCAAAGTGTCCTCGCCGATAGCTAAGCGTACACGCAGCTCTAGTAAAAAGGATGGCGATAGAAAAGACGAGAAGACTTCAGACGATTGTAAATCAGAGCTAAACTCTGAAGCGGTGGAACCGCCAGTCATAAAGACAGAGGTAAAACAAGAGTGCGTGGACAGTAGCGAGGATGAGATCTGGATAGTGCAGACAGCTGATGCCGAGGCCACGCAGGAGCTGCAGAAACTGCTTGACGCCGCCAAGGTGACTGGTGAAGGGCAGGAAGGCGAAGCCGAGAAGACACATAAATGCTTCAACTGCAGTCAAATATTCCCAAGCGCGGAAGGTCTGTCAAACCATCGTTGTCGGCGGCGCGGGCGCAAGCGGAAATCTAAGGACCTCGTCAATCTTATATGTATACCTACTGAGGAAGATTTTCTTAAGAGAGCACAAGGGCGTCCAAGGCAAGTCGACACATCGACTGATAATGATCTTCTCGTTATGCGTCCTCGAAAACGCCGCAGCCGGGAACCGACCTCCAACCCTCAGGTGGTGACCTGCCACAACTGTAACGAGTCATTCACCTCTAAAGTTAGACTCAAGTTTCATATGCAGTTCCACGACTCCACAAACCTGATCACATCAGACGGCCGCTACGCGTGCTCCGAGTGCGACGGAGCCACGTTCTCCACGGAGACGGAACTCTTCGACCACGTGCACTTCCAGCACGACAAGCAGAAGCGCTGGCAGTGCCCCGTGGAGGGCTGCGGCAAGACCTTCTTTCTAAGGGCAACCCTAACAAAACACAGTCGCACGCACACAGACACGCGCCGCTACGTGTGTGTGACGTGTGGGAAGCGGTTCCTAGACAAACAGACCTTAGATGAGCATGGAGTCACACATTTACAGATCAAGCCGTTCCAGTGCCACATATGCCTGAAGCAGCTAACCCGTCGCTCCCGCCTCCGCATGCACGTGCGAGCGCACGAGGAGGAGCTGGCCCCGCGCCTCGTGCGCGTGTGTGCCGTCTGCGCGCGGGCCTTCCGGGACCATCGACATGCACAGGAGCATGCATCAAAATCGACGGAGTGCATTGAGGCCTTCGCGAACGAGTTGAAAGAGGAAGCTGAGGAGGTGACAGTACAGCTGTCGCCCACCAGTGGGCTTGTCAGGCACACTGTGCAGATTGTTGAATCCCCAAAGCTATCGATGCCGATCAAGCGGCAGGTGTCACCAGAAGTGGGCGAGCCGCTGTTGTCGCAGCTGGCTGACGAGGCGAGAGCTCTCATCAGAGTGGTCGAGATCGAGAAGGCTTTCAGATGCGAGTATTGTGAGGATGTATTCTACTTGGAAAGCGGATTGAACTCGCACCGAGCGATACACAAGGGCGTCAAGAATCCCTTTACATGCCATATATGTAAAGTTAGCTTTGCTACTTACTCCAGATGCACCACTCACAAGACGACACACGGGTTCTACAAGCGCTCGCTCGCCGACGCTAAGAAGCAAGCCGGAGCCGCCGCCGCTCCCACTCGCATACTCGGATACGGAGACTTTCCCGTCGTCAAACACTTTCTGTGCGAGGACTGCGGTCGTTCGTATCTGCACTGGACGTATCTACAAGTGCACAGACGCATGAAGCACGCCAATGAAAACTTTTTGTATAAATGTAACCAATGCGAACTTACTTTCCCTAATAGTTGGAGTCTGGCTTACCACCGTAAGAAGGTGCACGGTAAGACTGGACCTGATGACCCTGGCTCCACGAGCAAGATCATTAGAGATGATTACAGAATACCATGTCGCGATTGTGACGAAGTCTTGCCAAACAAAACTGCACTCTATAAGCATAGGAAGAAGGAACACAGTGATGGAGCAAACCGCGTCAAGAACAAACAAGGCGAGGACGGCGGAGCGTGCTCCCGCTGTCACGCCACCTTCACACACGCGGCGGACTTGCATAAACACGTCAAAGAAGTCCATAAACAAGACATTGAGTCCTCCTGCACATCGTGCTCCCTATCCATGGACTACCGGCAAGGCCCGCAGCTGGGCAACGCCGGGCAAGCTGGGCAAGCCCGCCGGCCCCACTTGTGTCCGGTCTGTGGGCATGCGTTCAGGACTCTGTCTATGCGGAACGAACATTTGAGGGTCCATACAGGGGAGAGGCCGTTCCCTTGTGATGTTTGTGGAGTCGCTTTTAGAAGGTCTACAGCCATGCGTAACCACCGTCTGATCCACACGGGTGTCCGTGCGTGGGCATGCGGCCGCTGTCCCAAGCGGTTCCGCATACGATCAGACCTCCGCACGCATTTGAGGCTCAAGCATCCAGCTACTATACTTGTTATTGAGATGGAAGGCATGAACCCCAGCTCCGAGGATGTGATGAAGACTCTGGCGCTCCACAACGTGCCACATGACAAGCTCATCGAAGTCACCAAGATGTCTTTCTCCAAGGGCACAGCGAGTGTGATACCGTCGTGTGCTCGCGCCCTCTCCGCACTGAGCAGCGTGCCGCGCGATCACGTCGCTTGCGGGAAACCGCAGCCCTCCAGGATGTTGGAAGACTTCCAACCCGCCCGTCGCGGTCGTGGCATAGCCAAGAACCCGCGCCGACCCAAGATATTACAACGTGGTGACCCCGCTCTCGCCTCACATGGGCCTCTTGTACCTCATGCCTCACAACCCTCGCATGCCTCACACTCTTCAGGGTATCCTATAGCGGAGCTGTCAGACCTGAACGTGCAACTCCTACTGCGCGACGGCGTGCTCGTCAACGGCAACCAGATGGTGCAGCTGCAGCTCGACGATCCCATGATGCTGCAGTGA
Protein Sequence: MSETQPPLILCMENAAGEDVALKIEPDDNFQAFLDKAKSLLGFDVDLNSITRNQPVSLTDNVYQFLINAEQNLQQDELSQNFDPMLDPNDGANDLVYILDDGTQIRASQIHFDNDDPLIDLTAEKIPFVKYADDVTDVLEEDNINVQETKKINIVESPVSRWSSKNSSPKCSFVNSLPFKLVCNNTSGFEAQFTKYLEANTAKTYATLNPVTARNKSPKSLIKDNFKNYDDNYQRNDNLSYTREDILNMFKDSPMTSLPYDQGYGERRHVRKTDPSRLVHKSWNKPISYVDIDGVLIGESESQICFICGKHVDNSVDKLYLFDNEDQRLHRCSPQKKMSTQLKIICECCLNENFKPCRMKSANQFLNPDEFLVIRNNQQYIFQKIKNFSFTHLGKAKDIITKIESKVADKEEFVKVEIGSDGEIITKPIDNDPRSDDVIIVKDEKKDGSSSDVEIIEPEPEIDNIIDNLEEADEEVKEFLGKYQCDSSEVTELKCRFCEKIFVDLSEVTEHSETHKHELEDGEVFPCPLCNYGYANLKWLKGHLKAAHEKTESSNKEDDQIKEENEGDSQTSPKVSSPIAKRTRSSSKKDGDRKDEKTSDDCKSELNSEAVEPPVIKTEVKQECVDSSEDEIWIVQTADAEATQELQKLLDAAKVTGEGQEGEAEKTHKCFNCSQIFPSAEGLSNHRCRRRGRKRKSKDLVNLICIPTEEDFLKRAQGRPRQVDTSTDNDLLVMRPRKRRSREPTSNPQVVTCHNCNESFTSKVRLKFHMQFHDSTNLITSDGRYACSECDGATFSTETELFDHVHFQHDKQKRWQCPVEGCGKTFFLRATLTKHSRTHTDTRRYVCVTCGKRFLDKQTLDEHGVTHLQIKPFQCHICLKQLTRRSRLRMHVRAHEEELAPRLVRVCAVCARAFRDHRHAQEHASKSTECIEAFANELKEEAEEVTVQLSPTSGLVRHTVQIVESPKLSMPIKRQVSPEVGEPLLSQLADEARALIRVVEIEKAFRCEYCEDVFYLESGLNSHRAIHKGVKNPFTCHICKVSFATYSRCTTHKTTHGFYKRSLADAKKQAGAAAAPTRILGYGDFPVVKHFLCEDCGRSYLHWTYLQVHRRMKHANENFLYKCNQCELTFPNSWSLAYHRKKVHGKTGPDDPGSTSKIIRDDYRIPCRDCDEVLPNKTALYKHRKKEHSDGANRVKNKQGEDGGACSRCHATFTHAADLHKHVKEVHKQDIESSCTSCSLSMDYRQGPQLGNAGQAGQARRPHLCPVCGHAFRTLSMRNEHLRVHTGERPFPCDVCGVAFRRSTAMRNHRLIHTGVRAWACGRCPKRFRIRSDLRTHLRLKHPATILVIEMEGMNPSSEDVMKTLALHNVPHDKLIEVTKMSFSKGTASVIPSCARALSALSSVPRDHVACGKPQPSRMLEDFQPARRGRGIAKNPRRPKILQRGDPALASHGPLVPHASQPSHASHSSGYPIAELSDLNVQLLLRDGVLVNGNQMVQLQLDDPMMLQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00185633;
90% Identity: iTF_01221846;
80% Identity: -