Apul014044.1
Basic Information
- Insect
- Autographa pulchrina
- Gene Symbol
- -
- Assembly
- GCA_905475315.1
- Location
- FR997779.1:7878370-7890981[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.018 1.9 9.9 0.7 6 20 12 26 6 28 0.86 2 13 2.6 2.7e+02 3.1 0.0 2 20 34 52 33 54 0.88 3 13 1.4 1.5e+02 3.9 0.4 1 12 209 220 209 229 0.83 4 13 0.66 69 5.0 0.6 1 19 363 381 363 381 0.98 5 13 7.4e-06 0.00076 20.6 0.1 1 23 388 410 388 410 0.98 6 13 0.0011 0.11 13.7 2.4 1 23 424 446 424 446 0.99 7 13 3.2e-05 0.0033 18.6 0.6 3 23 500 520 498 520 0.97 8 13 0.00016 0.016 16.4 2.8 1 23 536 558 536 558 0.98 9 13 1.2e-06 0.00013 23.0 4.5 1 23 564 586 564 586 0.98 10 13 0.0032 0.33 12.3 6.4 1 23 592 614 592 614 0.97 11 13 1.7e-06 0.00017 22.6 0.4 1 23 620 642 620 642 0.98 12 13 0.00037 0.039 15.2 1.1 1 23 646 668 646 668 0.98 13 13 0.00041 0.042 15.1 0.1 1 23 676 699 676 699 0.95
Sequence Information
- Coding Sequence
- ATGGGTGGCCTCACTTTAAATTGTCCCCTTTGTTGCAATAAAATCTTTACTTCTAAAGAATCACTACAGGAGCATTTGTCAAACGTCTTAGAGAATTTATATTGTCCTGTATGTAATAGTAAAAAGACTTCATTAGACCAGCTCATAGCTCACTTGGCTCAGGATGATTGTGAGCCAGGGTCAAGTATCCGTCACACCATAATATATAAGGATGAAGAAGCACAAGGGGATAATATCATAGATTCAACAGAAATTAAGAGTACACATACTGAAGTATTTCCGCATGATATCCCCGCTAGCAGTACAACAACTTTCACAGGAGAACACAGTTATGAGGCACAGGTTGATCCAAATGACAGCAACAAGATGTATGTGGAGTTTATCAGCAAACAGCTGACCAAACCTTGCCTTCAAACCAGGGAGCTTAAGCTGGTGAAGGAAAATGGAGAGAGTCGGTACATGATAGTCACACAGGATGATGCTGAATTAAATGCTGAGAGCACTATTGTAACTAAACAGAATGTTGATGGGACTATTTCTTTGACAACAGTGAAAGACATGGATATAGTAACAGATGCTGTGATAGCAGACCCTGCTCCCCCTGAAGAGTCACAGGAGGAGTCCTACAGCTGTACTTCTTGCAATGTATCATTCTCATCAGTCATAGAGCATATACAGAACTACCACAATAATCAGGAGGTTGTAGTTGAGGAGCCACTAGTAGAAGACACAGACGCTTTGGAAACCATGGAGTACGAGACAGTTGAGAGCGAGGACACGTTAGTGACGACAGACAGACAAGCCCCGCGCCGCGTCATCACCGACACGGGAGATATTGTGGAAGAACAGCTTGTATTCAAAACTGAGGAGTCGGTGAAGAAGGAGACTATTCCTTTAGATGTAGTACAAAAAAATCCACGCAAAAGTGAAGTGAAAGTATCGCGAGTTGGCTTGACAGTCAAAAGAATGGAAAAACTATGTAATACCACCGGCAAGGATAAATCTAAATTCAATGAGAAACCCGGTAACTTTCACAAGGTTACTGTGAAAGAGGTGCAAACAGACTGCGGTTTTGCAGTCAAAATGTACCAATGTATGTCTTGTAACATTTGCGTCGCCACCTTGGACGAGTTCAAAACTCATCCATGTAAAGCATTAAAATACGTATGCCCGCATTGCCCAGTGGCGTATGATAACCCTAAATCTTTAAGCGCCCACATGAAAGTACACAAAGTGAGAGCAGACTGTGTCATTGATGACCCCGTATTGTACGAGTGTGAAATATGCTGTACTGTGTTCCCAACAAACAAGTCATTGAAACTACACAAACGGATGCACGATCCAATTAAATCTCGTCCCATAGAAGCTCCAGTAGAAAACTCAGACGGTTCAGAAGTGACCGAGGACAGATATTGTTGTCTCGTCTGCGACAAGATGATCCCCGTAAACTACAGGCTAATACACCAGAACTCGCACAAGACCTCCAACAAAATGAACTGCAGTATTTGCAATAAGAAGTTCAATTCTATGGAGTATCTCGAAATGCATATGAATGTACATAATACGGATAAGGTACCAATAAGTGAACAAGATGAAAGTCTTCCATATACCTGTTCATATTGCAACAGACGATTCGCCAGGCCGCATGAAAAAGTCAAACACGAAAGGATACATACAGGTGAGAAACCTCATTCGTGTGAGATCTGCGGCAAATCATTCCGCGTGTCCTACTGCCTGACCCTACACATGCGCACGCACACGGGCGCGCGCCCGTACGCTTGTCAACACTGCGGGAAGAGGTTCAAAGCACATAGCGTCTACAACCACCATTTACTTACTCACTCCGAGGTCCGAGCGTACAAGTGTCCGTACTGCCCGAAAGCTTTCAAGACTTCAGTACAACTGGCTGGTCACAAGAACTCTCATACGAAACCCTTCTCCTGCCAACATTGTAATCGGCCGTTTGCATCACTATATGCGGTCCGAGTCCACACAGAGACGCATTCTCGTCAGAACAACTTGAAGTTTTCATGTCAGATGTGCGGCGCGAGTTACGCAAGAGCTTTCGCGCTTAAAGACCATATCGAACAAGCGCATAAGCAGGAAGAACAGTCGCCGCCAAGAGTGATGGCTACGGACGAGGATTGGAACCCGGATACCGATAATGAGGGAATACAGGAGCTTAACAAAGATTTGACGCAAGAGATATCAGACCTGGGGATTAGTGCAAATGAGCTTATAGTTCCTTAA
- Protein Sequence
- MGGLTLNCPLCCNKIFTSKESLQEHLSNVLENLYCPVCNSKKTSLDQLIAHLAQDDCEPGSSIRHTIIYKDEEAQGDNIIDSTEIKSTHTEVFPHDIPASSTTTFTGEHSYEAQVDPNDSNKMYVEFISKQLTKPCLQTRELKLVKENGESRYMIVTQDDAELNAESTIVTKQNVDGTISLTTVKDMDIVTDAVIADPAPPEESQEESYSCTSCNVSFSSVIEHIQNYHNNQEVVVEEPLVEDTDALETMEYETVESEDTLVTTDRQAPRRVITDTGDIVEEQLVFKTEESVKKETIPLDVVQKNPRKSEVKVSRVGLTVKRMEKLCNTTGKDKSKFNEKPGNFHKVTVKEVQTDCGFAVKMYQCMSCNICVATLDEFKTHPCKALKYVCPHCPVAYDNPKSLSAHMKVHKVRADCVIDDPVLYECEICCTVFPTNKSLKLHKRMHDPIKSRPIEAPVENSDGSEVTEDRYCCLVCDKMIPVNYRLIHQNSHKTSNKMNCSICNKKFNSMEYLEMHMNVHNTDKVPISEQDESLPYTCSYCNRRFARPHEKVKHERIHTGEKPHSCEICGKSFRVSYCLTLHMRTHTGARPYACQHCGKRFKAHSVYNHHLLTHSEVRAYKCPYCPKAFKTSVQLAGHKNSHTKPFSCQHCNRPFASLYAVRVHTETHSRQNNLKFSCQMCGASYARAFALKDHIEQAHKQEEQSPPRVMATDEDWNPDTDNEGIQELNKDLTQEISDLGISANELIVP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00185542;
- 90% Identity
- iTF_00185542;
- 80% Identity
- -