Apul008660.1
Basic Information
- Insect
- Autographa pulchrina
- Gene Symbol
- -
- Assembly
- GCA_905475315.1
- Location
- FR997776.1:5527904-5534010[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.00034 0.035 15.3 0.2 2 23 142 163 141 163 0.93 2 11 0.00049 0.051 14.8 2.4 1 23 169 191 169 191 0.96 3 11 5.6e-05 0.0058 17.8 0.3 1 23 283 305 283 305 0.98 4 11 5 5.1e+02 2.2 0.6 2 23 312 334 311 334 0.90 5 11 0.00051 0.053 14.7 0.0 3 23 387 408 385 408 0.90 6 11 0.00018 0.019 16.2 0.1 1 23 423 445 423 445 0.93 7 11 1.2e-05 0.0012 19.9 0.2 1 23 476 498 476 498 0.98 8 11 0.00053 0.055 14.7 0.2 1 23 504 526 504 526 0.97 9 11 0.0003 0.031 15.5 0.3 1 23 532 554 532 555 0.95 10 11 0.008 0.83 11.0 1.1 1 23 568 590 568 590 0.96 11 11 0.024 2.5 9.5 0.0 1 20 702 721 702 724 0.93
Sequence Information
- Coding Sequence
- ATGGACACGGAAGCAGAAGACTTCAACCTCCAATGGGAGGAAGAAGTTGAAGTGAAGCATAGTCCAGCAGCTGAAACGGAGGAGGAAATATCAGGCTTAGATAATGCACAGGATACGGCATATTCTAACATGACATCGGAAGAAATGATGACGAGTACAGATCAAATGGCCGCAGAAAACTTAATGTTCTTAGCACAAGATGTAGTAAGTTATACAGAAACAGCTGAACTGGCGGATGACCCTAATGTGGAGTGTGTCACAGAGGAGGTGATTACTGATGACTGGGTGATACCTGGTGGCCAGGAGAGGGTGGAAGTCCCTATGGAACATCTCACATATCCAGATTTGGTTTTAAAAGAAGAAAATGATGTTGATGTACCCCTACCAACAGATCAAGATGAATACACAGCGATGCGACCATGGCCGTGCGACTTCTGTTCGCGGCGGTTCCGCAAGAAGGCGGCCCTCATGAACCACATGGTCGCGCATCAGAACGACCGGCCGCACGCCTGCAACCTCTGCGGCGTGCGCTACGTGCGCAAGTGTGATCTCATGAACCACCTCAAGGTGCACGCCTATGTGCCAGACAATCCTGATTCCATAGATTATGAAGACGTTTTAGACAATAACCAAATTGTAAAGCCAAAGAAGAAACGAGGTCGACGGAAAAAGAACCCTGAGCCGGTTGAGGAGAACGGCATGTGGGAGAACATGACGTCTGCCCGCACGCAGCAGTGGTCGCGTCGCGGCCGCAGCCCGGCCCGCGCCCCGCGCTCGCCGCCGTCGCCCGCGTCCGCGCCCACGCCGCCGTCGCCGCCGCCGCCGCCCACCGACCCCTCGCGACCCTTCGTCTGTCGCCACTGCGGCGTCGGCTTCGCCAGGGAGAAGGCCTTGCAGTCGCACGCCAGGGTGCACGGCGGCGACTCGCCGGTGGAGTGCAGCTCGTGCAACGAGTTGTGCTGGTCGCGCGAGGCGCTGGCCACGCACATGCAGCAGCGACACCCGCATCTGCCGCCGCGCGCCGAGCAGCCCGACCCGCCCTACGACTCCGACTCCGGTGACGACATGGAGTTCCGGCTGTCGCCGCTGTCGGGCGGCACGAGCGGCGCGGGCGGCGAGCGCGCCGTGTACGACACCATGCGCGGGCCCGAGCTGTTCTGCCAGGACTGCGGCGTGGCCTTCCAGCGAGCCGACCTGCTGCGGAGACACGTCGCCGCCGCGCACAGTTACAAGCGGCACGACAGCAACAGCAGTACGTGGGCGGAGCACACGTGCGAGGTGTGCGGCGAGAGCTTCACGGACGCGCTGCAGCTGCTGGCGCACGCCGAGGGCCACGCCGAGCGCCACCGCGCGCCCGCCGCGCCAAGGTTAAAAAGAATGACAAGGGGTAGAAATAATACCTCAACCTCAAATAGTTCGCGTCAATTTCCTTGTAGAGTATGTGGCAAGGTGTTTGGATCGCGGAGTTCTCAACAGATTCACATTCGCATCCATACGGGCGAGCGACCCTACGCTTGTCGGTTTTGTTGGAAGGCTTTCGCTGACGGCGGCACGCTGCGGAAACACGAACGGATACATACAGGAGAGAAACCTTACGCATGTGCTGTGTGCCCCCGCGCATTTAACCAGCGAGTAGTACTTCGGGAACACGTACGTTCTCATCATTCTGCGCCCGACAGACGCGCCAACGGTGGTCCTGCTTATTGTTGCGTTGTCTGCGGACGCACTCTGCACTCCAGTGCTGAACTTGTGCAACACTTAATACAGCATTGTGACGCCAACACGGCGCTTAAAAGACAGCCGCAGACTGGTCCAAGAAAATACAAGCGGCGGCGGAAACTGAAGAGCGAGCAGCAGTCGCCCAGCACGCCGCGCGAGTGGGAGCAGGCGTCGGTGTCGCCGGCGGGCGGGTCGCGCTCGGCCTCGCCCGCGTCGTCGGCGTCGGCGGCGTCCGCGCCCTCGCCGCGCCGCCGCCGCCGCGCCCCCGCCGCGCGCCCCCGCATGATCCACACGGCGCCGCGCGCCCCCGCCCGCGCCCGCCGCCCGCCGCGCCGCCCCGCCGACGACCTGCGCGCCATGCAGCCGCCGCCCGAGCCCGCCGTCTACAAGTGCGAGATGTGCGCGCTGGAGTTCCCGCGCCGCGACGCGCTGCTGCTGCACGTGCCGGTGCACATCTGA
- Protein Sequence
- MDTEAEDFNLQWEEEVEVKHSPAAETEEEISGLDNAQDTAYSNMTSEEMMTSTDQMAAENLMFLAQDVVSYTETAELADDPNVECVTEEVITDDWVIPGGQERVEVPMEHLTYPDLVLKEENDVDVPLPTDQDEYTAMRPWPCDFCSRRFRKKAALMNHMVAHQNDRPHACNLCGVRYVRKCDLMNHLKVHAYVPDNPDSIDYEDVLDNNQIVKPKKKRGRRKKNPEPVEENGMWENMTSARTQQWSRRGRSPARAPRSPPSPASAPTPPSPPPPPTDPSRPFVCRHCGVGFAREKALQSHARVHGGDSPVECSSCNELCWSREALATHMQQRHPHLPPRAEQPDPPYDSDSGDDMEFRLSPLSGGTSGAGGERAVYDTMRGPELFCQDCGVAFQRADLLRRHVAAAHSYKRHDSNSSTWAEHTCEVCGESFTDALQLLAHAEGHAERHRAPAAPRLKRMTRGRNNTSTSNSSRQFPCRVCGKVFGSRSSQQIHIRIHTGERPYACRFCWKAFADGGTLRKHERIHTGEKPYACAVCPRAFNQRVVLREHVRSHHSAPDRRANGGPAYCCVVCGRTLHSSAELVQHLIQHCDANTALKRQPQTGPRKYKRRRKLKSEQQSPSTPREWEQASVSPAGGSRSASPASSASAASAPSPRRRRRAPAARPRMIHTAPRAPARARRPPRRPADDLRAMQPPPEPAVYKCEMCALEFPRRDALLLHVPVHI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01221842;
- 90% Identity
- iTF_00327277; iTF_01221842; iTF_00185535;
- 80% Identity
- -