Apul013480.1
Basic Information
- Insect
- Autographa pulchrina
- Gene Symbol
- Znf516
- Assembly
- GCA_905475315.1
- Location
- FR997777.1:12414136-12415545[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.016 1.7 10.0 0.2 2 23 161 182 160 182 0.97 2 11 0.042 4.3 8.7 0.4 3 23 190 211 189 211 0.86 3 11 0.00024 0.024 15.8 0.8 1 23 218 240 218 240 0.98 4 11 4.8e-06 0.00049 21.1 1.1 1 23 246 268 246 268 0.98 5 11 9.3e-07 9.7e-05 23.4 2.1 1 23 274 296 274 296 0.97 6 11 1.9e-06 0.0002 22.4 2.0 1 23 302 324 302 324 0.99 7 11 5.4e-06 0.00056 21.0 0.2 3 23 332 353 331 353 0.97 8 11 0.042 4.3 8.7 0.1 5 23 359 377 358 377 0.78 9 11 4e-05 0.0042 18.2 1.4 1 22 383 404 383 406 0.91 10 11 0.012 1.2 10.5 0.3 1 23 412 437 412 437 0.94 11 11 0.0024 0.25 12.6 5.4 1 23 443 466 443 466 0.97
Sequence Information
- Coding Sequence
- ATGGAATACAAAATATGCCGTACCTGTCTCGACAAAACAACTAATACTGTATCTATATTTGATAAACATAATGATAATGAACAATATAGTGCCATAGTGATGCGATGCGCCAATGTGGATGTGAGAGAGGGTGATGGTCTTCCAGATAGTATATGCGCGCGATGTGAGGCGGAACTAGTCTCATCGCACGAGTTCTTCCGCAAGTGCAAGACGTCCGACAAGTCCCTTCGCAGTGCCAACGTGAACGTACCAGACACAAATAACTATGAGAAGCCAAAAATTGAAGTGGCAGTAAAGTTAGAATCGCTGGATGATACTGGACACGACGACCAAGATAGTTTTGATTTGTCCTACATTGAGAACACCAAGATACTAACACATGATTGTTATGATAAAAATAAAACCAAAATAAGTAAAACGAAAAAAAATCAACAAAATAAAATTGATAGACGCAAATTAAAACGTAAACTAGAACCAATCAGATGTGCAATATGTGGCATTACGGTATCATGCCAGTCTGCCATGGACAATCATATGAGAATACACACAGGTGAAAAACCCTTTGGCTGTGACTCATGCTCTTCTTGGTTTAGTAATAAAGGTTCACTCAAAAGACATATATCAATACAGCACTCTATAAGAGAACGTTCATTTATTTGTGAAACATGTGGCAGTAGCTTCTTTACCAAAAATGACATTAGAACACACCTGAGAGTTCACACAGATGAAAGGCCTTACTCCTGTCCTTACTGTACCAAGACCTTCAGACAGATTGCATCTGTGATACGTCACAAACGAATGCATACTGGTGAGAAACCATTCATGTGTACTATTTGCTCCAAAGGGTTCATAGACAAAAGCCACTTAAGCCGACACATGTATGTACACAGTAATGAAAAGAAATTCACTTGTCAGTTGTGCAACAGGTCTGTTAAAACTAAAAATGCTCTGACAACACATATGAGAACACATTCCAATGAAAATCATAATATATGTAACTACTGTGGGATGACATTCTCATTGAAGGGCAACTTGCTGGTTCATATTAAAAGAATACATTCTGAGAGGTCAGGGGAGTGCCAAATTTGTTCTAAGACATACCCTGACTTGGCAGTCCACATACGTAAGCATACTGGGGAAAAACCATTTAAATGTAAACTTTGTGATCAACCCTTTGCAACTAAAAGGAGTCTGTCTAACCACATGGGCTTCAAACATGAAAACGCATCGAAATTCAAGTGCTCTATAGGAGAGTGTAGCAAGACATTCCCGACTGCTATGATGCTGGAGTTCCACCTCCTCAAGCAGCACACTAACCACACTCCATATGTTTGCCAACATTGTTCTAGAGGTTTTTTCAGAACCTGTGATTTATCTCGACATCTTAAAGTGAGCCACAATGGAACCTAA
- Protein Sequence
- MEYKICRTCLDKTTNTVSIFDKHNDNEQYSAIVMRCANVDVREGDGLPDSICARCEAELVSSHEFFRKCKTSDKSLRSANVNVPDTNNYEKPKIEVAVKLESLDDTGHDDQDSFDLSYIENTKILTHDCYDKNKTKISKTKKNQQNKIDRRKLKRKLEPIRCAICGITVSCQSAMDNHMRIHTGEKPFGCDSCSSWFSNKGSLKRHISIQHSIRERSFICETCGSSFFTKNDIRTHLRVHTDERPYSCPYCTKTFRQIASVIRHKRMHTGEKPFMCTICSKGFIDKSHLSRHMYVHSNEKKFTCQLCNRSVKTKNALTTHMRTHSNENHNICNYCGMTFSLKGNLLVHIKRIHSERSGECQICSKTYPDLAVHIRKHTGEKPFKCKLCDQPFATKRSLSNHMGFKHENASKFKCSIGECSKTFPTAMMLEFHLLKQHTNHTPYVCQHCSRGFFRTCDLSRHLKVSHNGT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00185524;
- 90% Identity
- iTF_00185524;
- 80% Identity
- -