Apul024345.1
Basic Information
- Insect
- Autographa pulchrina
- Gene Symbol
- -
- Assembly
- GCA_905475315.1
- Location
- FR997791.1:2480160-2492711[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 0.00083 0.086 14.1 1.6 1 23 47 70 47 70 0.90 2 21 0.01 1 10.7 0.1 2 23 98 120 97 120 0.95 3 21 0.024 2.5 9.5 1.7 2 23 143 164 142 164 0.96 4 21 0.031 3.2 9.1 2.9 1 23 251 274 251 274 0.94 5 21 4.8 5e+02 2.2 0.0 2 23 301 323 300 323 0.85 6 21 0.029 3 9.2 0.6 2 23 346 367 345 367 0.97 7 21 0.0013 0.13 13.5 0.2 1 23 371 393 371 393 0.95 8 21 0.0096 0.99 10.8 0.8 1 23 398 421 398 421 0.94 9 21 2.6 2.7e+02 3.1 1.8 2 19 429 446 428 451 0.73 10 21 0.00016 0.016 16.4 0.6 2 23 459 481 458 481 0.95 11 21 3.8e-05 0.0039 18.3 2.9 1 23 487 509 487 509 0.97 12 21 0.13 13 7.2 0.3 3 23 587 608 585 608 0.89 13 21 0.033 3.4 9.1 0.1 2 23 634 656 633 656 0.95 14 21 0.00093 0.097 13.9 0.4 2 23 679 700 678 700 0.97 15 21 0.019 2 9.8 0.0 1 23 704 726 704 726 0.98 16 21 0.072 7.5 8.0 7.2 1 23 731 754 731 754 0.96 17 21 0.16 16 6.9 0.5 2 23 761 783 760 783 0.94 18 21 0.00039 0.04 15.1 2.3 2 23 791 813 790 813 0.96 19 21 5.7e-06 0.00059 20.9 2.3 1 23 819 841 819 841 0.98 20 21 5.6e-06 0.00058 20.9 0.6 1 23 847 869 847 869 0.99 21 21 1e-05 0.0011 20.1 3.4 1 23 875 898 875 898 0.98
Sequence Information
- Coding Sequence
- ATGATACAGAAATCAATTGAAGATTATAAACAGTCAAGAAACAAAATAATAGAAGAAGTGGATAAAAATCAGGCGAACCTTAAAGAAATATTGATGTCGTCAAACGCTACGCCATTCCGTGGGGCGGGCGACTTGGGCTATATCTGCTGTTACTGTGACACGAAATTCCCGAAACCAGCAAACTTGAAAACTCATAATCTCGAAATGCACGGAGATAGGAACGATCCTGCCTCTTCAAACATGGTCAAACGTAAAAACATTTACCGAGTCTATATTGATATAACAAACTTACAATGCAAGCTCTGTGACACGGAGATATCATCTTTATCAGAACTGCTCGAGCATTTGAAACTTGAACATAAAAAAACAGTTCACACGGACATCAAAAACAGGATCGTCCCATTCAAATTTAATACCGAAAACCTTCGTTGCTGCCTTTGTCCAAGTGTCTTCGATAGATTTAAAACCTTATTACAACATATGAATGCACACGGAGGCTATGCTTGTGACAAATGTGGTGATCTGCGAATAATAGCAAGAAAAATAAAGGACGAGGTCAAAAATCAAATACTAAATAAAAATACAGATGATTTAAGCGATGACGAGTCAGAAGATACCAATGAAATAGATAATAATCAAGTAATACGCAAAGCAACTCCAAGAACAGAAATAGTAAAACATCGGAGTAACATTAAAGAGATAATTTTAAATTCCAACGCTACGCCTATAAGAAAATATGGAGGGATCGGGTATACATGCTGCTACTGTCGTCTACAGTACCCCAAACCTACCGAACTAAAAAAACATACTCTAGAAAGTCACAAAGATGTCGACAAAGCTAATTTTATGGTCGACATGAACATGTCAGAGTATGTCGTCAAATTAGACGTTACTAACCTAACATGTAACATTTGCGACTCACTCATGAGCTCCCTAGACGAATTTATCAACCATCTTGGGATTGTACACAAGAAAAACATACACGAAGATATCCAATCCCATATATTTCCCATAAAATTTGATAATGAAGCAATTACTTGCGTTTTCTGCCCAAATTCGTTCAGTAAATTCCGTATGCTGGTCGGACACATGAATAAACATTTCAGGAATTTTGTTTGCGAGATATGCGATGCCGGTTTCGTTAATCGAAATTCTTTTACGCAGCATACTGTGAATCATAAAACTGGGGAGTACAAATGTGATTTCTGTCCCAAAGTGTACGCTACACGAGTGAAGAAACGACTTCATGAAAGAGCATCACATACACATGTCGATGAAATGAACAAATGCGCGTATTGCGATGAAACTTTTAAATGTTACAGAAAAAGAGAAGCACATTTAACTGAAGTTCATGGTTTGGAAGCAACAGAAGTCGTTTGCCAGGCTTGCGACAAAGTTTTCAAAACTAGAAAGATGTTAAATATGCACGTAAAAAGAGATCATTTACTAGAAAGAGCTCACAATTGTACCGAATGCGACAAAACTTTTTATTCCACTACTGGGTTAAAGAATCATATGGTGACTCATTCTAAATCTAGAGAGTTCCAATGTGTCCGGGGAACTAGAATAATCAAAATCGCAAAGCCATCGAAAACATCAGTTGAATTGAAGTTCGTTAAAAAGACGCCAGACCCTCTCGACCGAGAAGTTACCATAACCTCTTTGACGGAAACTGTGAAGAACAAAATCAATCTTAAAAACATACTCCTTAACTCTAATGCCAACCCGATCAGGTGTAAGGATAGCCAGGGGTACGGCTGCTCGTTCTGCCCAAAACAGTTCCCAGACCCGAAAATATTAAAAAAACATTTCCTCGATGAACATAACAATGATAAACTAATAAAATACATGTCGACGAAGTTATTTGAGCATGTTATCAAACTTGATATCACTTATTTAAACTGCGCGCTCTGTGATCAAGATTTTGGTAAGCTAGACGATTTTGTTGTCCATCTCAAAACTGAACATAACATACCGATGTATGTCGACGCTAAAACTGAAATAGTTCCCTTCAAATTTGATTCACCGGAGCTTAAGTGCGTTATATGTTCAACAGAATTTATATCTTTCAAACTTCTACAAGAGCATATGAACTCGCATTACGGGAACTACGTTTGCGAATTGTGTGGCAGTGGTTATGTAACTGAGAAACTCCTCGCAGGGCATGTGAAAAGACATGGCAGTGGACAGCACAAGTGTGAGCAATGTGACAAAACATTCACAAGTATTACAAAAAAGCATGACCATCAGAAACGGACACATTTAGGTTTAAAACGAAATAAATGTAATCAATGTTCGGAAAGGTTCGTCGATTACTGGAAGAAAATCGACCATATGGTGAAAGTACACAACATGCCTCCAATTGTCTTAAAATGTACAGCTTGTGAGCGAACGTTTAACAACCAGAGGTCTTTGTCCCGTCATACGAAAAAGGATCATTTATTGGAAAGGCGACATAAGTGTCCTGAATGCGACATGAAGTTTTTTGGTAAGAGTAGCTTACAGCGACACATGGCCAAACATACTGGGATCAGACAATTCCGGTGTGATATCTGTTTGAAAGCGTACGCCAGGAAGAATACTTTGAGGGAGCATATGAGGATCCACGCGAATGATAGACGGTTCGTCTGCCCTCATTGTGGACAGGCTTTCGTACAGAAATGTAGTTGGAGAAGTCATATGCGGTCTAAACATGGGGAAGAGGTGTAG
- Protein Sequence
- MIQKSIEDYKQSRNKIIEEVDKNQANLKEILMSSNATPFRGAGDLGYICCYCDTKFPKPANLKTHNLEMHGDRNDPASSNMVKRKNIYRVYIDITNLQCKLCDTEISSLSELLEHLKLEHKKTVHTDIKNRIVPFKFNTENLRCCLCPSVFDRFKTLLQHMNAHGGYACDKCGDLRIIARKIKDEVKNQILNKNTDDLSDDESEDTNEIDNNQVIRKATPRTEIVKHRSNIKEIILNSNATPIRKYGGIGYTCCYCRLQYPKPTELKKHTLESHKDVDKANFMVDMNMSEYVVKLDVTNLTCNICDSLMSSLDEFINHLGIVHKKNIHEDIQSHIFPIKFDNEAITCVFCPNSFSKFRMLVGHMNKHFRNFVCEICDAGFVNRNSFTQHTVNHKTGEYKCDFCPKVYATRVKKRLHERASHTHVDEMNKCAYCDETFKCYRKREAHLTEVHGLEATEVVCQACDKVFKTRKMLNMHVKRDHLLERAHNCTECDKTFYSTTGLKNHMVTHSKSREFQCVRGTRIIKIAKPSKTSVELKFVKKTPDPLDREVTITSLTETVKNKINLKNILLNSNANPIRCKDSQGYGCSFCPKQFPDPKILKKHFLDEHNNDKLIKYMSTKLFEHVIKLDITYLNCALCDQDFGKLDDFVVHLKTEHNIPMYVDAKTEIVPFKFDSPELKCVICSTEFISFKLLQEHMNSHYGNYVCELCGSGYVTEKLLAGHVKRHGSGQHKCEQCDKTFTSITKKHDHQKRTHLGLKRNKCNQCSERFVDYWKKIDHMVKVHNMPPIVLKCTACERTFNNQRSLSRHTKKDHLLERRHKCPECDMKFFGKSSLQRHMAKHTGIRQFRCDICLKAYARKNTLREHMRIHANDRRFVCPHCGQAFVQKCSWRSHMRSKHGEEV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -