Apul013309.1
Basic Information
- Insect
- Autographa pulchrina
- Gene Symbol
- -
- Assembly
- GCA_905475315.1
- Location
- FR997777.1:9690190-9696749[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.06 6.2 8.3 3.1 1 23 196 218 196 218 0.96 2 15 1.9e-05 0.002 19.2 1.7 2 23 240 261 239 261 0.97 3 15 4e-05 0.0042 18.2 0.3 3 23 270 290 268 290 0.95 4 15 1.7e-06 0.00018 22.5 2.3 1 23 296 318 296 318 0.97 5 15 0.06 6.2 8.3 3.1 1 23 385 407 385 407 0.96 6 15 2.3e-05 0.0024 19.0 2.5 2 23 429 450 428 450 0.97 7 15 3.2e-05 0.0033 18.6 0.2 3 23 459 479 457 479 0.94 8 15 0.00027 0.028 15.6 2.6 1 23 485 507 485 507 0.98 9 15 1.1e-05 0.0011 20.0 2.6 1 23 513 535 513 535 0.97 10 15 8e-08 8.2e-06 26.7 2.4 1 23 541 563 541 563 0.99 11 15 1.1 1.1e+02 4.3 0.2 1 13 569 581 569 582 0.89 12 15 0.00011 0.012 16.8 4.6 1 23 626 648 626 648 0.99 13 15 6.4e-07 6.6e-05 23.9 1.8 1 23 654 676 654 676 0.99 14 15 7.6e-07 7.8e-05 23.7 1.5 1 23 682 704 682 704 0.99 15 15 0.00024 0.025 15.8 3.0 1 23 710 732 710 732 0.97
Sequence Information
- Coding Sequence
- ATGGCTACAAATTTTTATCCTAGAGATTTAAACAACTCCTGTCGTACTTGTATGGAAAATATATCTGAAGATAATATAATGTATGATATTTTTACAATAAGAACCGACTTGGATATCGCTGCAATCATCTCGTCAAATACTTCTATACAGCTACAAAAGGATGACAGACTACCAAAGAAATTATGTTATCATTGCTTCAATTGTTTAATAAAATTCCATGAATTCAGAAAAAATGCGGAGAAGGTTGATGTTGAATTAAAAAACTACATTAACAAGCTAACAGAAGTCAAGAGTTATGTAGAAAATGGATTTACAGTAAAAGTAAAACTTGAACACGATGATGATCTTGAAGGTGACCCCTTTAATGATCCGAAAACTGTGGATTATCAGCCAAATGATGAAACAAATGATTCCGATGCCGAAGAAGGCCCACTTGAAATTGTCGAATATAAACCAAACATAGAAGAACTGAATATATCAAATGAAGAAAAAGACTCTCCTATTTTGGTAACAACAGAATTAGATAAAAATGACACTTCAGATAAGTCTGAACCTCAAAAACCTGAAGAGAAAGAAAAAGAATTGTTCACCTGTGCTATATGTTCACAGAATTTCAAACTGCATCATCAATATGCCAAACATGTGCTAGCACATGCCCCAAGTACACAAAGGCCTGATATCACAGAGAAACCAAATGACACTGAAAACAAAAGTCTAAAATGTGAGAAGTGTCCGAAACAATTCAAATCTGTTAAATCCCTATCAGCTCACCAAAGAAAGCACATATCCAAAGACAGAGTACTAGCATGTTCAATATGTAATAAGGTATTTAAAAAAGTAAGTGCATTAAAAAAACATGAGGCAAGCCACGAGAGCAACCGCTCACATAAATGTACAAAATGTTCCAAATCATTTGCGACGGAGAGTAATTTAACTGAACATATAAATGAGCATAACGGGGTTAAGACAACAAATGATTCCGATGCCGAAGAAGGCCCACTTGAAATTGTTGAATATAAACCAAACATAGAAGAACTGAATATATCAAATGAAGAAAAAGACTCTCCTATTTTGGTTACAACAGAATTAGATAAAAATGACACTTCAGATAAGTCTGAACCTCAAAAACCTGAAGAGAAAGAAAAAGAATTGTTCACCTGTGCTATATGTTCACAGAATTTCAAACTGCATCATCAATATGCCAAACATGTGCTAGCACATGCCCCAAGTACACAAAAGCCTGATATCACAGAGAAACCAAATGACACTGAAAACAAAAGTCTAAAATGTAAGAAGTGTCCGAAACAATTCAAATCGGTTAAATCCCTATCAGCTCACCAAAGAAAGCACATATCCAAAGACAGAGTACTAGCATGTTCAATATGTAATAAGGTATTTAAAAAAGTAAGTGCGTTAAAAAGACATGAGGCAATCCACGAGAGCAACCGCCCACATAAATGTACAAAATGTTCCAAATCATTTGCGACGGAGAGTATTTTAACTGAACATATAAATAAGCATAACGGAGTTAACCCACATGTTTGTCCGATATGCTCAAAAGCGTTTTCACATCTTTCAACATTCACCAATCATGTCAAAGTCCATACAAAGCCAAAGCCGTACTCATGTACTACTTGCGAAAAGACATTTGATTCTAGCTCTAATTTGAACCAGCATATGAGAAGGCATGCTGGATTAAAACCATTTGCTTGCAATTTATGTCCAAGGCAGTTTGTTAGTAAAGGTAGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTCAGTGCATGTCCCCTATACAGGTGATCTAAAATCCCATAAGATCACACATACGGGAGAGAGGTTATACAAATGTGACCAATGTCCTTCATCATTCACAAAGCGGTGCGCTCTGAACAAACACACACGAACGCATTCCGGTATTAGGCCCTATCAATGTGATACTTGCTCTATGAAGTTCACAAGTAAGGACAATTTGGAGCGACACACCAGGGTACATACGGGTGAAAGGCCGTACCGATGTAACTTGTGCGACAGAGCCTTCACACAAAGCAATGATCTGATCAAGCACAAACGATCGCACTTAGGAAATAATATATACCCATGCACAGAATGCTCACGGAGCTTCAAATTTTGCACAGAGCTTCGTCAACATTTGTTAGAGCATTCTTCGTCACAATCGAAAACATTACCTGTCAATAACACTGACAAGACCCTTATGCCTTTGGACTGCATAGATATATTGTGA
- Protein Sequence
- MATNFYPRDLNNSCRTCMENISEDNIMYDIFTIRTDLDIAAIISSNTSIQLQKDDRLPKKLCYHCFNCLIKFHEFRKNAEKVDVELKNYINKLTEVKSYVENGFTVKVKLEHDDDLEGDPFNDPKTVDYQPNDETNDSDAEEGPLEIVEYKPNIEELNISNEEKDSPILVTTELDKNDTSDKSEPQKPEEKEKELFTCAICSQNFKLHHQYAKHVLAHAPSTQRPDITEKPNDTENKSLKCEKCPKQFKSVKSLSAHQRKHISKDRVLACSICNKVFKKVSALKKHEASHESNRSHKCTKCSKSFATESNLTEHINEHNGVKTTNDSDAEEGPLEIVEYKPNIEELNISNEEKDSPILVTTELDKNDTSDKSEPQKPEEKEKELFTCAICSQNFKLHHQYAKHVLAHAPSTQKPDITEKPNDTENKSLKCKKCPKQFKSVKSLSAHQRKHISKDRVLACSICNKVFKKVSALKRHEAIHESNRPHKCTKCSKSFATESILTEHINKHNGVNPHVCPICSKAFSHLSTFTNHVKVHTKPKPYSCTTCEKTFDSSSNLNQHMRRHAGLKPFACNLCPRQFVSKGRXXXXXXXXXXXXXXXXXXXXSVHVPYTGDLKSHKITHTGERLYKCDQCPSSFTKRCALNKHTRTHSGIRPYQCDTCSMKFTSKDNLERHTRVHTGERPYRCNLCDRAFTQSNDLIKHKRSHLGNNIYPCTECSRSFKFCTELRQHLLEHSSSQSKTLPVNNTDKTLMPLDCIDIL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -