Apul021576.1
Basic Information
- Insect
- Autographa pulchrina
- Gene Symbol
- -
- Assembly
- GCA_905475315.1
- Location
- FR997778.1:8187915-8201969[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 4.8e-05 0.005 18.0 7.9 1 23 194 216 194 216 0.98 2 13 6e-07 6.2e-05 24.0 0.2 3 23 230 250 229 250 0.98 3 13 2.7e-05 0.0028 18.8 3.1 2 23 259 280 259 280 0.98 4 13 0.00022 0.023 15.9 1.6 3 23 288 308 286 308 0.95 5 13 2.4e-05 0.0025 18.9 3.0 1 23 314 336 314 336 0.97 6 13 1.5e-05 0.0015 19.6 8.4 2 23 343 364 342 364 0.97 7 13 2.5e-05 0.0026 18.9 0.8 1 23 370 392 370 392 0.97 8 13 1.4e-06 0.00015 22.8 1.1 1 23 398 420 398 420 0.99 9 13 0.00052 0.053 14.7 1.1 1 23 426 448 426 448 0.98 10 13 0.0002 0.02 16.1 0.7 1 23 454 476 454 476 0.96 11 13 7.9e-06 0.00081 20.5 0.3 1 23 482 504 482 504 0.97 12 13 0.00057 0.059 14.6 4.1 1 23 510 532 510 532 0.97 13 13 0.00018 0.018 16.2 2.9 1 23 601 623 601 623 0.99
Sequence Information
- Coding Sequence
- ATGGCTGCTCCAAATAAACCCTTGAAGTTTGACAAAATATGTCGAGCTTGTTTAGAGATAAAAAAGGACATGCGACCTCTATTTGAACAACTGACTGCGACGATGCTGATGGGCATATCGAAAGTGCAGGTGGCAGTTGGCGACGGGCTGCCGCCGCAGCTGTGTCTGCAGTGCGTGCACCAGATATCCCGCTGCCACGCCTTCAAGGAGCTGGTCGAGAGGAATGACGTCACACTACGCGAGCACGCCAAGCGACTGGCTGAGGAAGCTTATAATAGGGACAGGGAAGAGAAAGAGAAGATGCTAAGCCTGAGCTGTCCAGAACAGTCGTACATGCAGTACATGGAGGTGCCGCTGTCCAACTCTAGCCAGATCCTGGACGGGTTCTTCGCTGATACGCCGCAGCCGACGCCCAGCGCGCCCGAGATCGAGATTAAGGTTGATTATGAGGTGGAAAAGATCGAAACCACAGAAATAGCGACAACAACCCCCAAAGACAAAGAAGTCCTGAACTCAGACGAAGAGAACTATCTCCAGCTAGTGCTTTTCCAAGCGACGTCAACAGTATCTCCTGGCCGCCATGTCTGCAACCTGTGCCACAAAGAGTTCAAGCACTCGCGCTGGCTGAAGCAACACATGAGGTCGCATACTAATTGGATCAAAGCTAACTGCAAGAAGCCACCCATGTGCCCGATTTGTGATAGGACTTTTAAGGGTCCGGGCATGTTAAAAATGCACATGCGCACGCACGAGCAGCGTCCGCAGAAGCAGCCGACATGCTCTGTATGCCAGCGCACCTTCTCCACTAAGACGCTCCTCTACCGCCATAGACAAACCCACTTCGAACAGAAGACGCATCTGTGTACTGTCTGTGATAAGAGGTTCTACAGCGGGTACGCCCTGAGGTCGCATATGGCCAGGCATAGAGGAGAGAGGCCCTACATCTGCTCTAATTGCCATAAGAGCTTTTATAATCCTACGGATTTGAAGGTCCACTTCCGCCTTCACACCGGCGAGAAGCCTCTGAAATGCTCGGAGTGCAACAAGACGTTCCGGCGGCACTCGACGCTGTGCCAGCACATGAAGAAGCACCGCGGCATACGGAACCACATCTGTAACGTGTGCAACAAGGGATTCTATGAGGTGTCGAAATTGAACGCGCATATGAGGGTGCATACAGGCGAGCGTCCGTACGAGTGCCAGTACTGCGAGCGTCGCTTCGCGCAGCAGTCGGCGCTGATCTACCACCGGCGCACGCACACGGGCGAGAAGCCCTACTCCTGCAAGCTCTGCTCCGCCAAGTTCACCACCTCTTCCGCCAGGAACAACCATCTCATCACCCATACTGGGAACAAGAAGTTCGTGTGCCCGGTGTGCTTCAAGGGCTGCAGCTCGCGCTCGGAGCTGCGCGTGCACGGAGCGCGGCACTCGGGCGAGAAGCTGTTCGCGTGCGAGCTCTGCGACCAGCGCTTCAGCTCGCCCTCCTACCTCGCCGTGCACCGCCGCTACCACACCGGCGAGAAGAAGCACCACTGCCGCGTCTGCGGGAAGGGCTACGTAGAATCGAATGCCTTCAAGAAGCACATGAAGACGCACGAGAAGTCGGAGACAGAGTCGTCGGCGTCGGAAAACAGCGGCGAGGCGCCCACAGCTGACGATGCGCAGGCGCAGGCTGAACAGAACGCGAGCGCTGAAGATACTGGCGAGAATCAGGCTCAAGTTCAAGGTCAAATGCAGGAGTCCCAGCAAGTCATGCAGGTTCAGGGTCAGGGAGAGCTGGCGGCGTCGGGCCAGAAGAAGTACAAGTGCGGGCTCTGCGAGAAGACCTACATGTATCTGCACACGCTCAAGAAACATATGCTCGTGCATACACCGGACCGAGGTCGCAGCTCAGAGCCACTAATATTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTCGGAAATGTGCAGCAACTTGCAGTGCCGATACATGCGCAACATGTACAGCAAGGGATCACTGTTTCTGGAGTGCAGGCGAGCCAGCACCCTTACCCCGTGATATCGTCGGTGCAGTCCCTGCAGCTGCAGCAAACTCACCAGGTTAACTCGCAACAGCCACAGCAGCTGCAAGTGCAGACCATACAGATACATCCTCAACACCAACCTATACAAATACATGCGGTGGGTGTCCAGCAAGTACAACAGCAGCAGCTGCATGTGGCCACTTCCTCGTGCCAGACCATGCTGCCCAATATACTACAGCTGCAGCCGGCGACCGTGGCAGTGTCCGGGCTGGGCCAGCAGGAGCTCGGCGGCGTCACGCACCGCATCATCCTGCAGCCACAGCCTTCCGCCGCGCACCCCGCCGTCTACACCATACACCACTAA
- Protein Sequence
- MAAPNKPLKFDKICRACLEIKKDMRPLFEQLTATMLMGISKVQVAVGDGLPPQLCLQCVHQISRCHAFKELVERNDVTLREHAKRLAEEAYNRDREEKEKMLSLSCPEQSYMQYMEVPLSNSSQILDGFFADTPQPTPSAPEIEIKVDYEVEKIETTEIATTTPKDKEVLNSDEENYLQLVLFQATSTVSPGRHVCNLCHKEFKHSRWLKQHMRSHTNWIKANCKKPPMCPICDRTFKGPGMLKMHMRTHEQRPQKQPTCSVCQRTFSTKTLLYRHRQTHFEQKTHLCTVCDKRFYSGYALRSHMARHRGERPYICSNCHKSFYNPTDLKVHFRLHTGEKPLKCSECNKTFRRHSTLCQHMKKHRGIRNHICNVCNKGFYEVSKLNAHMRVHTGERPYECQYCERRFAQQSALIYHRRTHTGEKPYSCKLCSAKFTTSSARNNHLITHTGNKKFVCPVCFKGCSSRSELRVHGARHSGEKLFACELCDQRFSSPSYLAVHRRYHTGEKKHHCRVCGKGYVESNAFKKHMKTHEKSETESSASENSGEAPTADDAQAQAEQNASAEDTGENQAQVQGQMQESQQVMQVQGQGELAASGQKKYKCGLCEKTYMYLHTLKKHMLVHTPDRGRSSEPLIFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVGNVQQLAVPIHAQHVQQGITVSGVQASQHPYPVISSVQSLQLQQTHQVNSQQPQQLQVQTIQIHPQHQPIQIHAVGVQQVQQQQLHVATSSCQTMLPNILQLQPATVAVSGLGQQELGGVTHRIILQPQPSAAHPAVYTIHH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01094252;
- 90% Identity
- -
- 80% Identity
- -