Apul017282.1
Basic Information
- Insect
- Autographa pulchrina
- Gene Symbol
- -
- Assembly
- GCA_905475315.1
- Location
- FR997761.1:16407093-16411180[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 2.7e-09 1.1e-06 28.9 0.1 4 43 7 45 5 46 0.94
Sequence Information
- Coding Sequence
- ATGACTGATAGGCAGAAGGCCATACTAAAGGCCATGGAGGCGGTCAAGAAAGGAGCCTCAATTTCAGCTGCTGCCAGGCAGTTCGGTATCCCACGGTCGACGTTGGATGACAAATTACGTGGCCGCTATTCTGTCGAATGCTCCAAAGGACCGGCTACAGTTTTGACGAAAGAAGAAGAAGAATATTTAAGCAGTTGGATTATTTTTATGGCAAATAGTGGGTTTCCTGTAACTAAGGCGCAGTTATTGGATAGCGTGAGTTTATTGGTGAAAAAGATGAAGCGAGAAAACCCATTTCAAAATGACAGACCAGGTCGGCACTGGTTTGAAGCTTTTATAAAGCGACACCCTGAAGTAGGCCAGCGAGTAGCTCAAAATTTGACGCAAACCCGTGCTTTAGTCAAAGAAAGTGACATAAGAGCATGGTTTAAAGAAGTGGAAGAATATTTTATAAAGACCAATATCGAAGAAGCAACTCAAGATCCACGTAGGATTTTTAATTGCGATGAAAGCGCTTTCTTTTTGTCACCGTCTGATAACAGAGTTCTGGCAAAACGAGGGGCAAAAAACGTTTACAACGTTATTCCCAGCGGCGAAAAAGAGTGTGTGACAGTTTTGGTCACGGCTAACGCAGCAGGTGAATTGGCGCCTCCGATGGTTTTGTTCAAGTTGAAATCAATTCCACACAAAATTTCAAAAACCGCACCGAAGGACTGGGGATTAGGATTTACGCCAAAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCTGCCACTAAGCAATTTCTGTCGGGAAAAAAACATACAACTGGTTGCATTATATCCTAATGCGACTCACCTAATTCAACCGATGGATGTGGCGGTTTTTCGACCTCTGAAGATTATATGGAAGAGGTCAGTTTATGACTGGCGAAATGATAACCACTTCATAAAATTACGCAAAGAAAATTTCTGCCCGCTGCTACATAAAACTCTCATACAATTGGACCCCAACTCGATCAAAAATGGATTTCGAAAATGCGGCTTATCACCTTTTGATGCAAACGCTGTCGATTATTCCAAGTGTGTAACAAGTCAACCTAAAAAACCAGCCAAACCCAATAAATCTAAAGAAATACAATCAGATACCATGAGTCATGTCAAATTCTTTGAATCACAAATAAGTCCTGAAAACCTCGAAGCTTTTTACGGCAACGGAAATGCAATTTGGAAAGGGGATAAATCCTTAGAAGGATTATTTAATGTCTGGAGGCAAATGCATTTTCAAAATAATTTACCTTCAGATAGATTCAATGACTCTTTGGTTTTGACAGAATTGTGTGCTCAAGAAACGTCTAATATCGATGAACTGCCATCATCTGGAGATATTGGAAACTTCACAGGGCTGACTGACATCTTGGAATCAAATTTGAACTCAAACGAGTTCAGTGACTTCCTCCTAATGACTGAAAATGAAAGCCATGCAGGAAAGATAGAAATGTATGAAAATGTCGATGGGATCCTGATGAAAATCATGGACGTGGAAATCCCAACTAATGAGCCTTCACTGACAAATTGTATCGAAGAAAACCAAACTCGTTCTGAAAATGAAGTACGAAACACACATCATTTAACAGGTCAAGTGATCCGGACAATAGCCTCTAACCCTATATATATCGCTTCTCGCAAAAATATTACAACAAACTCTGGAATAATAACAACAGCTATAACGTCGAATGTGGTTGAGACAGATACTATAAGTATGAAACAGCCATCATTACTTGCTAACACGGACTCGATTACTGAATTAGTGCCGACACAAATACAATATCAGTCAAGCATGACACAATCGTCATTTTCTAGCAAAGAACTCGTTCCTATAACACCTCCAAGTAAAACATCACCAATGCATTCAAAGAAAGTCAAAGCGACATCGATAATGGCTGATGATACAACTCCTGATTATACACAAAGCAGAATCAAGACATCCGAAAATATGAAGACACCACTACATACACCTACAGAACAAGACTTACCTGACGATAACAGACGCAACCAACCAAAAACTAAATATTATGGAGATTTAGTTGTACCCACACCATTTAAAGACGCTTTATTTTGGCCAGAAACTCCTAATAGCACCACAAAAAGTAAAATTAAATTACCTAGCGTAATAACATCTGATAGGTGGCAAATATTTGCACAGAACAAGCTAGAAGCAAAGACAAAAAAAGAGGAGAATAAAGTTAAAGCAAAAGAAAAAAACAGAAAAAGAGCTGAGCTTGGAGTTGGTAACAAGAAACCTAAGAAGAAATCAATAGATACTGGGGCGAGGGACATCACAAATGAGGATTGGTTCTGTCGGTTATGCCAAAGAAGCACGAAATTGGACATGATAGAATGTGTGACTTGCAAGACCTGGTATCATACGATTTGTGCAGAAGTTTCACCAAATGAAATAACGTTTACTTGTATGTATTGTTACGTGTCGTGTGATGAATAA
- Protein Sequence
- MTDRQKAILKAMEAVKKGASISAAARQFGIPRSTLDDKLRGRYSVECSKGPATVLTKEEEEYLSSWIIFMANSGFPVTKAQLLDSVSLLVKKMKRENPFQNDRPGRHWFEAFIKRHPEVGQRVAQNLTQTRALVKESDIRAWFKEVEEYFIKTNIEEATQDPRRIFNCDESAFFLSPSDNRVLAKRGAKNVYNVIPSGEKECVTVLVTANAAGELAPPMVLFKLKSIPHKISKTAPKDWGLGFTPKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLPLSNFCREKNIQLVALYPNATHLIQPMDVAVFRPLKIIWKRSVYDWRNDNHFIKLRKENFCPLLHKTLIQLDPNSIKNGFRKCGLSPFDANAVDYSKCVTSQPKKPAKPNKSKEIQSDTMSHVKFFESQISPENLEAFYGNGNAIWKGDKSLEGLFNVWRQMHFQNNLPSDRFNDSLVLTELCAQETSNIDELPSSGDIGNFTGLTDILESNLNSNEFSDFLLMTENESHAGKIEMYENVDGILMKIMDVEIPTNEPSLTNCIEENQTRSENEVRNTHHLTGQVIRTIASNPIYIASRKNITTNSGIITTAITSNVVETDTISMKQPSLLANTDSITELVPTQIQYQSSMTQSSFSSKELVPITPPSKTSPMHSKKVKATSIMADDTTPDYTQSRIKTSENMKTPLHTPTEQDLPDDNRRNQPKTKYYGDLVVPTPFKDALFWPETPNSTTKSKIKLPSVITSDRWQIFAQNKLEAKTKKEENKVKAKEKNRKRAELGVGNKKPKKKSIDTGARDITNEDWFCRLCQRSTKLDMIECVTCKTWYHTICAEVSPNEITFTCMYCYVSCDE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01064591;
- 90% Identity
- iTF_00186098;
- 80% Identity
- -