Basic Information

Insect: Autographa pulchrina
Gene Symbol: -
Assembly: GCA_905475315.1
Location: FR997786.1:9541913-9544714[-]

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 1 2e-09 8.5e-07 29.3 0.0 1 43 16 58 16 59 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	1	2e-09	8.5e-07	29.3	0.0	1	43	16	58	16	59	0.95

Sequence Information

Coding Sequence: ATGCCTCGTCAATATCAAAGAAAATCATTGCGAGCGACTTCGTATACCCAGGAAGAATTACAGTCAGCCATAGAACGAGTGAAAAGTGGAGAGCTCTCTAATTATGCAGCCTCGAAAATGTACAATATCCCTACATCTACTCTTAACGACCACGTGAAAGGTAAAACAGGCTTATTAAGTCAAACACTTGGTCGGGCCCCTGCAATTCCCATAGAGATGGAAAATAAGCTTGCATCTTGTCTACGAGTATTGGAAAAATGGGGCTGGGGCTTATCTAGGACCGAAGTTTTAGATATTACCGAGAAGTTTATAAAGGCCAACAATATCAAAACGCCATTTAAAAATGATAGACCCGGGCCCGATTGGTTCATATCATTTCGCAAGCGACACCAACTTTCGATTAAAAAACCGCAATCCATCGAGTATATCAGGAAACGAATGACAGATCCCTTTGTCATATGCGAATACTTCACCATGCTGAAAGAAACCCTTTTGGAGTTGGACATAACTGATCCTCAAAGAATTTGGAATCTAGATGAGACGTCGGTATGTTTAGACCCCACAAAAACTAAGGTAGTGGGTGGTATTGGCGCCCCATGCACAAGAACGACAAAAGGAACAGGCAAAGAGAACATTACAGTGTTGACAACCGTTAGTGCTGCTGGTAAAAAATTATCGCCTTTGATTGTCTTTAAAGGCAAATATATGTATAAAGAGTGGATGAACCAGAATGAAAAAGAAAAATATGATTTTGAAATTTCTTATGCCGTCAGCAATCGCGGTTGGATGGAGACAGCGTTATTTTTTGATTACATGGATAAAATTATCATTCCAAGTTTGGGTGACGAGCGGCCAGTTTTAATTATTTACGATGGTCATAACAGTCACGTAGACCCGAAAGTTGTGGAATTAGCTGTAAAAAACCATATAACGATTCTAAAACTGCCCGCGCACACCTCCCATCTACTTCAACCACTGGATTTAGCGGTGTTTAAGTCCTTTAAGACAAGTTGGGACACAAAGCTTGTCCAGTGGCAACGGCAGAATGTCGGCGTTAAAATACGCAAACAAGTATTTGCGGAATTGTTTGCTGAAACGTGGCAGCAGGTAAATACAAATGTGATTCAAAGTGGTTTTAGAAAAGGAGGCATTTTTCCGTTTAATGCGAATGTTATACCGGAAGAAAAATATGATCCAGCGGCACTGAAGAGATGGAAAATAAAGATGTCTGAAAAGAAATTGACAGAGTTGAAAACGCTTAAACACATGTGTGTAGAAATCATCAATAAAAATATGTTTTCCATTACATCTGTTTCCACAAATCAAAACGATGTTGGCAGTTTCAACGACAATATCGGACAGACTCAGCCAGGGTACAACATTTCATTTGAGGAGCTACTTCTTAAAAAGGTTACCCAAAATTCTCAAAATACAGGTAATAAAAACTCGACCAAACTAACACGAGTTGCAAAGGGAAGCGAAGTCATAACACGCAGCTTCTTAGAGAAACAGAAAGAAACAGAAGAAGAAAATATGCAAAAGCCTAATTCAAGTTCATCAAAAGAAATGTCGGCATCTCAACCCAATGATAACGAGAAACCTGGTCCATCTAACATAACAAAGAAAAAACCAAAGAATATGAAATCAAAAATAGAGAAAACGAGTGATGAAACAAAGATTTGTATTACTAAAAAGAGAAAGGGCATTGGCAAAAAGACTCGGATTGGAAATGAAAGTCTGATCGTAAAGACGAATGATCTCAAAAGTATTAAATCCGAATCCAAAAAAGGTGTACCTAAAAAACAAAAACTCATATCTAAAAAACCATGCTTGAAAAAATCCGCGAAAAAGACAAAAAGATCTACAAGCTTTACGACTTCGGAAAGCGGCGAAATAAGCACTCATAGCGATTCAGATATATTTGAAGCTATGAGCGATAATTTTTCAGAAATAGACATTGAGAATAAGGAGGAAATACCTGTCCAAGAATTCTCCAGTAAATCTAAAATTAAACAAACAGTTCTAGAAACAGATAAAAGAATGGAAGGGTTGCAAACAAATGAGAGAATGGAAGAGCTGCAGATAGATCAGAGAGTGAATGAGTTTCAGACTGATGAGATAATTGAAGAGTGGCAAACAAACAGAAGAATGGAAGAGTTGCAGATACAGAGTTATAAGGGTGATATTGACGTAAGGAAGGTTACCATGGAAAAAGAACTGCACTCAAAAGTTTACAGAAAAGGAGAAGTGAACATTAATAGTAACGAAACCAAAGAACAAAACAATCCTGTACTGGACTTACCTCCGCAATCATCAGGTAATCTTGATAAAAGAGAAAAAGTCACTATTTTGTCCTCTGTTCGTTTTAAGCCTGAAAATACTGCCTTTTGCGGAGAAAAAAGTTGTGTTTCCCTACAACTTAGAAATATTGACCTAAACTTTGACCTATCAAAACATAATAAAGAGAAGTTGACCAAAACGGAAGAAAATAATAAAAAAGTCAAGTTAACACATGAAACTGAGTTCTATATTGGGGATACAGTTTTGACTCGGTACTACACCAAGAGTTGGAAATATTACGTCGGTGAGATTAAACATTTTAACGCTGAAACANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGTACCTAAACGTAAAGACGAAGACTGTGTGCCTGAGGATACAATCGTGAAGCAAATAGAATTACTTCAGATCAACGAGAATCCGGTGGAATATACTCTTATGAACGACGAAGACGCTATTTACTTTTAA
Protein Sequence: MPRQYQRKSLRATSYTQEELQSAIERVKSGELSNYAASKMYNIPTSTLNDHVKGKTGLLSQTLGRAPAIPIEMENKLASCLRVLEKWGWGLSRTEVLDITEKFIKANNIKTPFKNDRPGPDWFISFRKRHQLSIKKPQSIEYIRKRMTDPFVICEYFTMLKETLLELDITDPQRIWNLDETSVCLDPTKTKVVGGIGAPCTRTTKGTGKENITVLTTVSAAGKKLSPLIVFKGKYMYKEWMNQNEKEKYDFEISYAVSNRGWMETALFFDYMDKIIIPSLGDERPVLIIYDGHNSHVDPKVVELAVKNHITILKLPAHTSHLLQPLDLAVFKSFKTSWDTKLVQWQRQNVGVKIRKQVFAELFAETWQQVNTNVIQSGFRKGGIFPFNANVIPEEKYDPAALKRWKIKMSEKKLTELKTLKHMCVEIINKNMFSITSVSTNQNDVGSFNDNIGQTQPGYNISFEELLLKKVTQNSQNTGNKNSTKLTRVAKGSEVITRSFLEKQKETEEENMQKPNSSSSKEMSASQPNDNEKPGPSNITKKKPKNMKSKIEKTSDETKICITKKRKGIGKKTRIGNESLIVKTNDLKSIKSESKKGVPKKQKLISKKPCLKKSAKKTKRSTSFTTSESGEISTHSDSDIFEAMSDNFSEIDIENKEEIPVQEFSSKSKIKQTVLETDKRMEGLQTNERMEELQIDQRVNEFQTDEIIEEWQTNRRMEELQIQSYKGDIDVRKVTMEKELHSKVYRKGEVNINSNETKEQNNPVLDLPPQSSGNLDKREKVTILSSVRFKPENTAFCGEKSCVSLQLRNIDLNFDLSKHNKEKLTKTEENNKKVKLTHETEFYIGDTVLTRYYTKSWKYYVGEIKHFNAETXXXXXXXXXXXXXXXXXXXXVPKRKDEDCVPEDTIVKQIELLQINENPVEYTLMNDEDAIYF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00186095;
90% Identity: iTF_00186094;
80% Identity: iTF_00186094;