Apul018536.1
Basic Information
- Insect
- Autographa pulchrina
- Gene Symbol
- clz9
- Assembly
- GCA_905475315.1
- Location
- FR997761.1:24947210-24949408[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 2.8e-10 1.2e-07 32.1 0.0 1 40 16 56 16 59 0.92
Sequence Information
- Coding Sequence
- ATGGTGCGGACTTATAAACCAAAAAATACAAGTAGACAAGCTGTGGACGAAGAATCCATGCAGTCAGCAATACAGGATGTTATGCAAGGAGTATTGTCATATAGAAAAGCTGCGGACAAGTACAATTTGAAATTGTCGACATTAGAAAGCCGAGTAAAAAAATACAAGAATAGCAATGATGCTCAAGGGTCAAGAAACCGTACATTTGACTCTAAATATACAAGTTTCCAAGTATTTTCTATGGAAGAAGAAAAACTGCTAAATGATTATATTATCAAATGTTGTAAGATGCATTATGGTCTTACGACGATACAAGCGAGAAAACTAGCATATGAGTATGCCAAATCTTTGTGTTTGAAATATCCAGCAAAGTGGGAAGAAAATAAGATGGCTGGTAAAGAATGGATGTATGGTTTTCGCAGAAGAAACCCGGAACTCAGTTTACGCAAACCCGAAAACACAAGCGCTGCCAGATCATTTGCGTTTAACAAAACTTCGGTTACCGAGTTTTATACCAACTTGAAGACAGTGTTGGAGCGACATCCATTAACTGCTGACAGAATCTATAATTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGTCTCTGTTTTAAAACATATCCAGAAGCACACACTCTGCACAAAAGATAACCCCATATTATTGTTGTGTGACAACCACGAAAGCCATGTTTCTCTCGAAGCCATTAACTACGCCAAAGAAAATGGCATGATTTACCTATCTTTTCCACCACATACATCTCATCGCCTACAACCACTAGATGTGGGAGTCTTTGGACCATTTAAATCAAAGTTGAAAATTGCTTTCAATAATTGGCATATAATGAACCCAGGCAAAGCATTGACAATTTACAATATTCCAAAGCTTGTGAAAATTGCATTTTTCGAGTCATTCACAGCAAAAAATATCACAAGCGGGTTTAACAAACCCGGAATATGGCCTCTTAATGAATTAGCCTTTAGTGCCGAAGATTTTGCTCCAACTGAGGTGTATACATCCGGTAACTTAGAACATATGCCTCCTACTCAAAACGTCGTTGAAGATTTGTCTGCACATACTCTGCAGCCAATTGTCTCTGATATCTGCCAACCCTCTATTTCTGGAACACAGGATTTCTTGGAGGTTCCGCGAGAATCTACAGAACAAGCTATTAACTCACCATTGATAACAACTTATGATGATGAACTACAAAGGTTTAATTTAGATGCTTGTGAACCAGATGCTTTGAACAATTCACCAATCCATCAAATAGTAGCTCCTTTGAATACAGTTTTGACACCAGAGGCAATTCGACCCTATCCGACTGTTGTAAGAAGTAATAAAACAAAAAAAGGACGAGGACCAGGAAAATCACGTATTTATACTGACACACCCGAAAAAAAGCTAATTGAAGAGAAACACAATGAAAAGCAATTGAAAAAGCTAGAACAGGAAAGAAGGGCGAGGGCAAGACAAATGAAACGTAGTTTAGCTGATTTTAATTTAAAAACGAAGAACAAGAAAGCTAAAACCAAAGAAAGTGATGAATCTGATTGTGATGGATCTGATATAAGCTTTCAAGAGAGTTCAACTTCTATCACAGATGAAGATGAAACCGAGCATGAAAATTTTGAAATGAACAGAAGCCAATTGACAGTTGATGTAATACCAGAAAATATTAAAGACGGTTCGTTTATTTTAGTGAGGTTCCCTAAGAAAAAAAGTATTATTTACTATGTAGGAAAAGTTATCGGCCACTATAGTCAGTCTGAATTTAAAGTATCTTATTTAAGAAAGAAGCCAGGCTGTTCGTGGACGTTTGTTTTCCCTTATGTTGAAGATATTCATACTGTTTATATAACTGATGTTGAAATGATTCTTCCTGAACCAAAGCCTCCAACAGTTTGTACTTCTAGAACATCAAAACTTTTCACTTTTTCAGTAAATTTTTCTAATTTTACTGTTCAATAG
- Protein Sequence
- MVRTYKPKNTSRQAVDEESMQSAIQDVMQGVLSYRKAADKYNLKLSTLESRVKKYKNSNDAQGSRNRTFDSKYTSFQVFSMEEEKLLNDYIIKCCKMHYGLTTIQARKLAYEYAKSLCLKYPAKWEENKMAGKEWMYGFRRRNPELSLRKPENTSAARSFAFNKTSVTEFYTNLKTVLERHPLTADRIYNFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVSVLKHIQKHTLCTKDNPILLLCDNHESHVSLEAINYAKENGMIYLSFPPHTSHRLQPLDVGVFGPFKSKLKIAFNNWHIMNPGKALTIYNIPKLVKIAFFESFTAKNITSGFNKPGIWPLNELAFSAEDFAPTEVYTSGNLEHMPPTQNVVEDLSAHTLQPIVSDICQPSISGTQDFLEVPRESTEQAINSPLITTYDDELQRFNLDACEPDALNNSPIHQIVAPLNTVLTPEAIRPYPTVVRSNKTKKGRGPGKSRIYTDTPEKKLIEEKHNEKQLKKLEQERRARARQMKRSLADFNLKTKNKKAKTKESDESDCDGSDISFQESSTSITDEDETEHENFEMNRSQLTVDVIPENIKDGSFILVRFPKKKSIIYYVGKVIGHYSQSEFKVSYLRKKPGCSWTFVFPYVEDIHTVYITDVEMILPEPKPPTVCTSRTSKLFTFSVNFSNFTVQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01034477;
- 90% Identity
- -
- 80% Identity
- -