Apul005883.1
Basic Information
- Insect
- Autographa pulchrina
- Gene Symbol
- -
- Assembly
- GCA_905475315.1
- Location
- FR997762.1:24723849-24724361[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 4.4e-11 1.9e-08 34.7 0.0 1 35 30 65 30 70 0.94
Sequence Information
- Coding Sequence
- ATGGATTTCTTTATTTCAATGTTTGTGTTGTTCCCCTACCTGTTAGATTATGGTCATAACACGCGCAAGATGAAGTCTCCGACGTGGACCCACGAGCAGCTGCAGAAGGCCATCCAAGCTGTCGTCACCCAGAGAATGAGGTTCACACAAGCCGCTACACATTTCGGAATCCCAAAAGGGACTTTATACGATAACATATTAGGGAAATCAAAACGCATGGCAGTGTTAGACGAAGCAGGGTTACAAGCCAGTGAAGAAAGAGCAGTTCTAGATTACTGTTGCAAAGCTAACGTGTCCCCATACAATAGGCGGACCAAAAAGTCCTTAAAACAAGTGTTACCTTTCGTAGAAAAGTTGAGGAAGATGAGAGACCCAAACTTTGTTTTCAAAGGTCTAACTGGTTTTAGATGGTGGTGGGCCTTCTGTAAAAAATATTCTATAGTGTCACTGTACTACGAAGGTTCTTTAAAGAATAAAGACTTACTAAAACTTAAAGAAGAGTCTGATGAATGA
- Protein Sequence
- MDFFISMFVLFPYLLDYGHNTRKMKSPTWTHEQLQKAIQAVVTQRMRFTQAATHFGIPKGTLYDNILGKSKRMAVLDEAGLQASEERAVLDYCCKANVSPYNRRTKKSLKQVLPFVEKLRKMRDPNFVFKGLTGFRWWWAFCKKYSIVSLYYEGSLKNKDLLKLKEESDE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00327018; iTF_00185246;
- 90% Identity
- iTF_00185246; iTF_00327018;
- 80% Identity
- -