Agaa021736.1
Basic Information
- Insect
- Autographa gamma
- Gene Symbol
- -
- Assembly
- GCA_905146925.1
- Location
- LR989876.1:1997725-2006017[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.66 60 4.9 0.8 1 23 1340 1362 1340 1362 0.96 2 9 0.75 68 4.7 0.1 2 23 1430 1451 1429 1451 0.93 3 9 0.062 5.7 8.2 0.7 1 23 1455 1477 1455 1477 0.96 4 9 0.007 0.64 11.1 1.7 1 23 1483 1506 1483 1506 0.85 5 9 0.11 10 7.4 1.1 2 23 1513 1535 1512 1535 0.91 6 9 3.7e-06 0.00033 21.5 1.3 1 23 1541 1564 1541 1564 0.98 7 9 0.00014 0.013 16.5 1.8 1 23 1570 1592 1570 1592 0.98 8 9 4.1e-06 0.00038 21.3 1.8 1 23 1598 1620 1598 1620 0.99 9 9 3.1e-06 0.00028 21.7 2.6 1 23 1626 1648 1626 1649 0.96
Sequence Information
- Coding Sequence
- ATGGCTACGGTTAAAAACAACGGTCCTATAATAGACCCTGCGCTTTGTAGATGCTGTAGAGCTATAAAAAAATGTAGAGTTCTCACAGCGGAATACACTTGGATGGATCAGAAAGAAGTTTACGCCGATATGGTCATGGATTGCTTCGGCGTCTTGCTATCGCATGTAGACGACAACGAGCGAGACTGCGGCGTGTGCGCGACGTGTGTGGTGCGGCTGCGAGACGCGTGCGCGTTCCGACAGCAGGTGCTGCAGTGCGAGGAGCTGTTCCTGAGCGCCAGGCTCGAGGACAAGGATGTGGAAGGTATACCAGCAGTTGTATGTGTCTCTCATGGTGTATGGTACAGCGAGAGGAGTGTAGCGTGCGCGTTCCGACAGCAGGTGCTGCAGTGCGAGGAGCTGTTCCTGAGCGCCAGGCTCGAGGACAAGGATGTGGAAGGTATACCAGCAGTTGTATGTGTCTCTCATGGTGTATGGTACAGCGAGAGGAGTGTAGCGTGCGCGTTCCGACAGCAGGTGCTGCAGTGCGAGGAGCTGTTCCTGAGCGCCAGGCTCGAGGACAAGGATGTGGAAGGTATACCAGCAGTTGTATGTGTCTCTCATGGTGTATGGTACAGCGAGAGGAGTGTAGCGTGCGCGTTCCGACAGCAGGTGCTGCAGTGCGAGGAGCTGTTCCTGAGCACCAGGCTCGAGGACAAGGATGTGGAAGGTATACCAGCAGTTGTATGTGTCTCTCATGGTGTATGGTACAGCGAGAGGAGTGTAGCGTGCGCGTTCCGACAGCAGGTGCTGCAGTGCGAGGAGCTGTTCCTGAGCGCCAGGCTCGAGGACAAGGATGTGGAAGGTATACCAGCAGTTGTATGTGTCTCTCATGGTGTATGGTACAGCGAGAGGAGTGTAGCGTGCGCGTTCCGACAGCAGGTGCTGCAGTGCGAGGAGCTGTTCCTGAGCGCCAGGCTCGAGGACAAGGATGTGGAAGGTATACCAGCAGTTGTATGTGTCTCTCATGGTGTATGGTACAGCGAGAGGAGTGTAGCGTGCGCGTTCCGACAGCAGGTGCTGCAGTGCGAGGAGCTGTTCCTGAGCGCCAGGCTCGAGGACAAGGATGTGGAAGGTATACCAGCAGTTGTATGTGTCTCTCATGGTGTATGGTACAGCGAGAGGAGTGTAGCGTGCGCGTTCCGACAGCAGGTGCTGCAGTGCGAGGAGCTGTTCCTGAGCGCCAGGCTCGAGGACAAGGATGTGGAAGGTATACCAGCAGTTGTATGTGTCTCTCATGGTGTATGGTACAGCGAGAGGAGTGTAGCGTGCGCGTTCCGACAGCAGGTGCTGCAGTGCGAGGAGCTGTTCCTGAGCGCCAGGCTCGAGGACAAGGATGTGGAAGGTATACCAGCAGTTGTATGTGTCTCTCATGGTGTATGGTACAGCGAGAGGAGTGTAGCGTGCGCGTTCCGACAGCAGGTGCTGCAGTGCGAGGAGCTGTTCCTGAGCGCCAGGCTCGAGGACAAGGATGTGGAAGGTATACCAGCAGTTGTATGTGTCTCTCATGGTGTATGGTACAGCGAGAGGAGTGTAGCGTGCGCGTTCCGACAGCAGGTGCTGCAGTGCGAGGAGCTGTTCCTGAGCGCCAGGCTCGAGGACAAGGATGTGGAAGGTATACCAGCAGTTGTATGTGTCTCTCATGGTGTATGGTACAGCGAGAGGAGTGTAGCGTGCGCGTTCCGACAGCAGGTGCTGCAGTGCGAGGAGCTGTTCCTGAGCGCCAGGCTCGAGGACAAGGATGTGGAAGGTATACCAGCAGTTGTATGTGTCTCTCATGGTGTATGGTACAGCGAGAGGAGTGTAGCGTGCGCGTTCCGACAGCAGGTGCTGCAGTGCGAGGAGCTGTTCCTGAGCGCCAGGCTCGAGGACAAGGATGTGGAAGGTATACCAGCAGTTGTATGTGTCTCTCATGGTGTATGGTACAGCGAGAGGAGTGTAGCGTGCGCGTTCCGACAGCAGGTGCTGCAGTGCGAGGAGCTGTTCCTGAGCGCCAGGCTCGAGGACAAGGATGTGGAAGGTATACCAGCAGTTGTATGTGTCTCTCATGGTGTATGGTACAGCGAGAGGAGTGTAGCGTGCGCGTTCCGACAGCAGGTGCTGCAGTGCGAGGAGCTGTTCCTGAGCGCCAGGCTCGAGGACAAGGATGTGGAAGGTATACCAGCAGTTGTATGTGTCTCTCATGGTGTATGGTACAGCGAGAGGAGTGTAGCGTGCGCGTTCCGACAGCAGGTGCTGCAGTGCGAGGAGCTGTTCCTGAGCGCCAGGCTCGAGGACAAGGATGTGGAAGGTATACCAGCAGTTGTATGTGTCTCTCATGGTGTATGGTACAGCGAGAGGAGTGTAGCGTGCGCGTTCCGACAGCAGGTGCTGCAGTGCGAGGAGCTGTTCCTGAGCGCCAGGCTCGAGGACAAGGATGTGGAAGGTATACCAGCAGTTGTATGTGTCTCTCATGGTGTATGGTACAGCGAGAGGAGTGTAGCGTGCGCGTTCCGACAGCAGGTGCTGCAGTGCGAGGAGCTGTTCCTGAGCGCCAGGCTCGAGGACAAGGATGTGGAAGGTATACCAGCAGTTGTATGTGTCTCTCATGGTGTATGGTACAGCGAGAGGAGTGTAGCGTGCGCGTTCCGACAGCAGGTGCTGCAGTGCGAGGAGCTGTTCCTGAGCGCCAGGCTCGAGGACAAGGATGTGGAAGGTATACCAGCAGTTGTATGTGTCTCTCATGGTGTATGGTACAGCGAGAGGAGTGTAGCGTGCGCGTTCCGACAGCAGGTGCTGCAGTGCGAGGAGCTGTTCCTGAGCGCCAGGCTCGAGGACAAGGATGTGGAAGGTATACCAGCAGTTGTATGTGTCTCTCATGGTGTATGGTACAGCGAGAGGAGTGTAGCGTGCGCGTTCCGACAGCAGGTGCTGCAGTGCGAGGAGCTGTTCCTGAGCGCCAGGCTCGAGGACAAGGATGTGGAAGGTATACCAGCAGTTGTATGTGTCTCTCATGGTGTATGGTACAGCGAGAGGAGTGTAGCGTGCGCGTTCCGACAGCAGGTGCTGCAGTGCGAGGAGCTGTTCCTGAGCGCCAGGCTCGAGGACAAGGATGTGGAAGGTATACCAGCAGTTGTATGTGTCTCTCATGGTGTATGGTACAGCGAGAGGAGTGTAGCGTGCGCGTTCCGACAGCAGGTGCTGCAGTGCGAGGAGCTGTTCCTGAGCGCCAGGCTCGAGGACAAGGATGTGGAAGGTATACCAGCAGTTGTATGTGTCTCTCATGGTGTATGGTACAGCGAGAGGAGTGTAGCGTGCGCGTTCCGACAGCAGGTGCTGCAGTGCGAGGAGCTGTTCCTGAGCGCCAGGCTCGAGGACAAGGATGTGGAAGGTATACCAGCAGTTGTATGTGTCTCTCATGGTGTATGGTACAGCGAGAGGAGTGTAGCGTGCGCGTTCCGACAGCAGGTGCTGCAGTGCGAGGAGCTGTTCCTGAGCGCCAGGCTCGAGGACAAGGATGTGGAAGAACCTAAAGCAGACAAGCCGTCGATCGACATAGAGCTGAAGTTGGAGCCTAAAGACGACTGCAGCGAGCCTTCCGTCGGCGGCGACCTGGATCACGATGACATGTCCATGGACTACCCTGACGATATCGGAGAAATAAAACCACCAAAAAAAGAAGAGACTGATAAAGAACAGCTGCCAGAAGAGAAGCAACTAGATGATGACGAGGAGAGCGACTGGTCGGCTTCCTCCAGCGACAGCGACAAGCCCATCAAGCGGAAGAAGAAGACCAACGGGGCGCAGAAGAAGAAGAAACCCGTCAAGAAGCAGAAAGCAGGCACATCATCAAAAAAACAGTCTCCAAAAACAGTCAAAAAGCCACCCGTTGAGAAAAAAAATAACTACGATCGAGACCTCGACTGCATGTCCGAAGAGAATCTACTAACAATCATACAATACTCATATGTCTGTCCGTTCAAAAACAGACGTAACAACTACTATTGCTTCTACTGCAAAGACTACTACCCAAAGCCAGAGGATCTAAGAGAACACACCGTCTCACACGACACCAAGCCCTTTCAGCTACTCATGGGGTATAAAAAAATGATCAAAATCGATATCACGAGAATCGATTGCAGATTATGCACGACAAAAATCGATGATTTAAACGTATTTAAACAACATATCGATCAAGTACATGGAAAAAAGATTTATTTTGAGGCGCCGGATAAGATGTTGCTTTACAAATTAACTTGGAATGACCTTGTCTGTGTTATGTGTAGCGATGTATTCGAAGATTTCAATACTTTGAACACTCACATGGTGGAGCATTTCAGTAATTATACTTGCGATATCTGTGGCGTATGCTTCTTAGAAAAACCGAGATTAGACGCACATTTAAAACGTCACAAAGACGATGAACGGCACACTTGTGAAGTTTGCGGAAAAGTTTTCAAATCGAATCATTACAAAGATATGCATGTAGATATAGTTCATAAGAAAAAAGCTATTATCAGATGTCCGCGCTGCGACGAGTGTTTCATGTCATACGCATTGAAAAACAAACATTTAACCGAAGCCCACGGTCAGAAAAGAACATACCCGTGTAATCTATGCGATAAGGTGTATAACAGGCAGAAAACATTAACGGAGCATCAACGAAGGAATCATCAAAAAGTCTTGAAGCACCAGTGCGAGTATTGTGACCAGCGATTCTACTTACCTTCGCGGTTAAAGGAGCATATGGCCACTCATACCGGCGAAAGGAACTTCCGATGTGAGTATTGCGAGAAGAGTTATCCTAGATTGAAGTCACTTCAATATCATATAAGAACGCATACGAATGATAGGAGGTATAGGTGTCATATTTGTGGGCAGGCCTTCATACAGAATCCTAGTTTGAAATCTCATATTAAGAGCCATCATCCTGAGTGTGATATTGAGGGATGCTATTTTTAG
- Protein Sequence
- MATVKNNGPIIDPALCRCCRAIKKCRVLTAEYTWMDQKEVYADMVMDCFGVLLSHVDDNERDCGVCATCVVRLRDACAFRQQVLQCEELFLSARLEDKDVEGIPAVVCVSHGVWYSERSVACAFRQQVLQCEELFLSARLEDKDVEGIPAVVCVSHGVWYSERSVACAFRQQVLQCEELFLSARLEDKDVEGIPAVVCVSHGVWYSERSVACAFRQQVLQCEELFLSTRLEDKDVEGIPAVVCVSHGVWYSERSVACAFRQQVLQCEELFLSARLEDKDVEGIPAVVCVSHGVWYSERSVACAFRQQVLQCEELFLSARLEDKDVEGIPAVVCVSHGVWYSERSVACAFRQQVLQCEELFLSARLEDKDVEGIPAVVCVSHGVWYSERSVACAFRQQVLQCEELFLSARLEDKDVEGIPAVVCVSHGVWYSERSVACAFRQQVLQCEELFLSARLEDKDVEGIPAVVCVSHGVWYSERSVACAFRQQVLQCEELFLSARLEDKDVEGIPAVVCVSHGVWYSERSVACAFRQQVLQCEELFLSARLEDKDVEGIPAVVCVSHGVWYSERSVACAFRQQVLQCEELFLSARLEDKDVEGIPAVVCVSHGVWYSERSVACAFRQQVLQCEELFLSARLEDKDVEGIPAVVCVSHGVWYSERSVACAFRQQVLQCEELFLSARLEDKDVEGIPAVVCVSHGVWYSERSVACAFRQQVLQCEELFLSARLEDKDVEGIPAVVCVSHGVWYSERSVACAFRQQVLQCEELFLSARLEDKDVEGIPAVVCVSHGVWYSERSVACAFRQQVLQCEELFLSARLEDKDVEGIPAVVCVSHGVWYSERSVACAFRQQVLQCEELFLSARLEDKDVEGIPAVVCVSHGVWYSERSVACAFRQQVLQCEELFLSARLEDKDVEGIPAVVCVSHGVWYSERSVACAFRQQVLQCEELFLSARLEDKDVEGIPAVVCVSHGVWYSERSVACAFRQQVLQCEELFLSARLEDKDVEGIPAVVCVSHGVWYSERSVACAFRQQVLQCEELFLSARLEDKDVEGIPAVVCVSHGVWYSERSVACAFRQQVLQCEELFLSARLEDKDVEGIPAVVCVSHGVWYSERSVACAFRQQVLQCEELFLSARLEDKDVEGIPAVVCVSHGVWYSERSVACAFRQQVLQCEELFLSARLEDKDVEEPKADKPSIDIELKLEPKDDCSEPSVGGDLDHDDMSMDYPDDIGEIKPPKKEETDKEQLPEEKQLDDDEESDWSASSSDSDKPIKRKKKTNGAQKKKKPVKKQKAGTSSKKQSPKTVKKPPVEKKNNYDRDLDCMSEENLLTIIQYSYVCPFKNRRNNYYCFYCKDYYPKPEDLREHTVSHDTKPFQLLMGYKKMIKIDITRIDCRLCTTKIDDLNVFKQHIDQVHGKKIYFEAPDKMLLYKLTWNDLVCVMCSDVFEDFNTLNTHMVEHFSNYTCDICGVCFLEKPRLDAHLKRHKDDERHTCEVCGKVFKSNHYKDMHVDIVHKKKAIIRCPRCDECFMSYALKNKHLTEAHGQKRTYPCNLCDKVYNRQKTLTEHQRRNHQKVLKHQCEYCDQRFYLPSRLKEHMATHTGERNFRCEYCEKSYPRLKSLQYHIRTHTNDRRYRCHICGQAFIQNPSLKSHIKSHHPECDIEGCYF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -