Basic Information

Insect: Autographa gamma
Gene Symbol: -
Assembly: GCA_905146925.1
Location: LR989871.1:3228397-3230529[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.032 2.9 9.0 0.1 3 23 228 249 227 249 0.89

2 10 5.6 5.1e+02 2.0 1.7 2 23 258 278 258 278 0.90

3 10 0.076 6.9 7.9 1.0 2 23 294 314 293 314 0.96

4 10 0.024 2.1 9.5 1.0 3 23 327 347 325 347 0.96

5 10 0.018 1.6 9.8 0.3 2 23 373 393 372 393 0.96

6 10 6e-05 0.0054 17.6 4.5 1 23 400 422 400 422 0.94

7 10 0.051 4.6 8.4 1.8 1 23 428 450 428 450 0.98

8 10 3.3e-07 3e-05 24.8 1.1 1 23 456 478 456 478 0.99

9 10 0.00038 0.035 15.1 0.5 1 23 484 507 484 507 0.95

10 10 1.6e-05 0.0015 19.4 1.5 1 23 513 536 513 536 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.032	2.9	9.0	0.1	3	23	228	249	227	249	0.89
2	10	5.6	5.1e+02	2.0	1.7	2	23	258	278	258	278	0.90
3	10	0.076	6.9	7.9	1.0	2	23	294	314	293	314	0.96
4	10	0.024	2.1	9.5	1.0	3	23	327	347	325	347	0.96
5	10	0.018	1.6	9.8	0.3	2	23	373	393	372	393	0.96
6	10	6e-05	0.0054	17.6	4.5	1	23	400	422	400	422	0.94
7	10	0.051	4.6	8.4	1.8	1	23	428	450	428	450	0.98
8	10	3.3e-07	3e-05	24.8	1.1	1	23	456	478	456	478	0.99
9	10	0.00038	0.035	15.1	0.5	1	23	484	507	484	507	0.95
10	10	1.6e-05	0.0015	19.4	1.5	1	23	513	536	513	536	0.96

Sequence Information

Coding Sequence: ATGCGGAGGCGTAATAAAGTGCAAAGTAGAAATTCAACTATATCTCAGAATACAACCGATCAGCGATACTCATCGGAAAAGTGTCGAGTGTGTTTAGATGACGGAGAAATACCAATTTTCGGCGTGAAAGATATATCAGATCAAGTAGCAGAGTTTGGTAATATAAAAATCAGTGCAAATGATAACCTCCCTCAGTCTTTATGCGAAGCTTGTTATACGCTATTGGAAGCCGCTATCCTGTTTAGACAAACCGCGAAACAGGCCAATGATTTTCTCAGGAGGAATCGTGGGAAAGTCGCATCGTCAGCGGCTTCAGACGATTCCAATTATCAAAATGAAAATGAACCCGAAATAAAACGGGAATACCTTGAGTTAGACGAGACCTCTGAATCTGAACTAGACGACTTTGATAAGTTAAGACTTAAAATTGAGTCTGATGACGAAACAGTTGATTACCTTGCTTTAGCTAAAAATCTAAACATGTCAGTTAAATCTGAAGGTGATGATAGTATCGATTACCGGTCGGCATCTGAAGCTGGTACTCAAGAAACAGATGACACCCAAGACTATGAAGTAGAGGCATTAGAGAGTGAAGAAGAAGAAAGTGTTACAGAGCCAGACAGTGAAATGATAATGATCATAGTATCTGATAAGGACAAACAAAACCAAGCTCAGCCAGCTTGTGACAAATGTAATATTGCTTTTGATAACATTGAAGATCTTTTGAAACACAATGAAAATACACATCCAAAGCCAGGTTTGGATGAAAGAGAATGCGAAATATGCCATAATATAGTAAAAAAGAAAACATACAAAGTTCATTTGAAAGAGCACAGAGAAAAGTATCAAGAGAAACATAATAAGAAGTATGGAAAGGTTGAATGTAAAGTTTGCAATAAGAAGATTAGTAAAGCATATTATAAATACCACCTTAAAATGCATGGAACTGCTGAAGAACGAGCTGAGAGATTTATGGATTGTCCAATATGTAAGAAAACCATTAGTGCACACTACTACAATGACCATATGAAAAGAATCCATGATAAGAAAATAAAGCACAATCAACAAACATCTGAGAAAACTATACCCAAAGCAGATTCACCTAAAAAATACAATAAATGTCCAGTATGTGACAAAAAAGTAAAAGAGAGTGAGTATAAAGTGCACTTGGCAAAACATGGTGGTCCTTTGCGACGCTACATTTGTGATAAATGTGGAAAAGTGTTCAAACATCCATCTGCATTTAAAACTCACTGTTTAACACATGGCAGTGAATTGAAATTCAAATGCCAATTTTGTCCATACAGAGGTCTCCATCAAGGGCTTTTAAAGATTCATGTTCGGACCCACACAGGGGACTACAACTACAAATGTACTGAATGTCCTGCTAAGTTTATAACTAAGAGTAACTTGTCTAAACACATTCAACGGCACAAGGGACTGTGTAACTACAAATGCGAGATATGCAATAAAGGATTTTATGCAAAACGGGATTTAGACAAACATAACAATATTGTTCACTTAAAATTACGGAACCATGTTTGTGAGGAGTGTGGCAAAGTTTTTGGACACAGAGATAATATGTTGAGTCATCAACTGAAAGTACATAAAAGAGAAAGGATCATCACAAAAGGCAGAATGCCTTCATATCTGAAAAAAGATCAAGAGGCTTACAAAAAGAAGTCCCCCCTTAGAGCGTGGGCACACGATGCGTTGCGGCAGCGGTGCGGCGCCGTCGTTTTACATACAAATATCTGTGGCGTGCACACGGTGCGCTCCGGCGCCTCACCGGACTTGCAGCCACCAAGACGTGGCGGGGGCAAGAGAGACGAGGCGCCGCTGCGGCATAACAACGTTGCGGCGCCGCGAAAATCTTATTGCAGTAATAATAATAATGAGCTTGTAAAATAG
Protein Sequence: MRRRNKVQSRNSTISQNTTDQRYSSEKCRVCLDDGEIPIFGVKDISDQVAEFGNIKISANDNLPQSLCEACYTLLEAAILFRQTAKQANDFLRRNRGKVASSAASDDSNYQNENEPEIKREYLELDETSESELDDFDKLRLKIESDDETVDYLALAKNLNMSVKSEGDDSIDYRSASEAGTQETDDTQDYEVEALESEEEESVTEPDSEMIMIIVSDKDKQNQAQPACDKCNIAFDNIEDLLKHNENTHPKPGLDERECEICHNIVKKKTYKVHLKEHREKYQEKHNKKYGKVECKVCNKKISKAYYKYHLKMHGTAEERAERFMDCPICKKTISAHYYNDHMKRIHDKKIKHNQQTSEKTIPKADSPKKYNKCPVCDKKVKESEYKVHLAKHGGPLRRYICDKCGKVFKHPSAFKTHCLTHGSELKFKCQFCPYRGLHQGLLKIHVRTHTGDYNYKCTECPAKFITKSNLSKHIQRHKGLCNYKCEICNKGFYAKRDLDKHNNIVHLKLRNHVCEECGKVFGHRDNMLSHQLKVHKRERIITKGRMPSYLKKDQEAYKKKSPLRAWAHDALRQRCGAVVLHTNICGVHTVRSGASPDLQPPRRGGGKRDEAPLRHNNVAAPRKSYCSNNNNELVK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00186601;
90% Identity: iTF_00186601;
80% Identity: -