Basic Information

Insect: Autographa gamma
Gene Symbol: -
Assembly: GCA_905146925.1
Location: LR989872.1:7969646-7978522[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 5.6e-06 0.00051 20.9 1.2 1 23 296 319 296 319 0.97

2 9 0.015 1.4 10.1 6.1 2 23 327 348 326 348 0.96

3 9 0.00095 0.086 13.9 5.2 2 23 380 401 380 401 0.98

4 9 5.4e-05 0.0049 17.8 0.6 1 23 405 428 405 428 0.97

5 9 0.11 10 7.3 0.7 2 20 441 459 441 461 0.93

6 9 9.3e-05 0.0084 17.0 2.0 2 23 498 520 497 520 0.95

7 9 0.39 35 5.6 0.1 1 23 533 554 533 557 0.74

8 9 3.5e-06 0.00032 21.5 2.2 1 23 560 582 560 582 0.99

9 9 0.00017 0.015 16.2 6.7 1 23 588 611 588 611 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	5.6e-06	0.00051	20.9	1.2	1	23	296	319	296	319	0.97
2	9	0.015	1.4	10.1	6.1	2	23	327	348	326	348	0.96
3	9	0.00095	0.086	13.9	5.2	2	23	380	401	380	401	0.98
4	9	5.4e-05	0.0049	17.8	0.6	1	23	405	428	405	428	0.97
5	9	0.11	10	7.3	0.7	2	20	441	459	441	461	0.93
6	9	9.3e-05	0.0084	17.0	2.0	2	23	498	520	497	520	0.95
7	9	0.39	35	5.6	0.1	1	23	533	554	533	557	0.74
8	9	3.5e-06	0.00032	21.5	2.2	1	23	560	582	560	582	0.99
9	9	0.00017	0.015	16.2	6.7	1	23	588	611	588	611	0.98

Sequence Information

Coding Sequence: ATGTCGGATCTCGAAATTTGTCGCATCTGTTTGAGTAAAGACGTGAAGGTGTATAGTTACAAACTGTACAATTTAAAACAATTTTATGAAGACATTATGAGGACAAAAATAGACGAAGATGGCTTACCAAGATTCTTTTGCTATCAATGTGCGGCCATGTTGTACAAATATCACAAGTTTAAAGAGAAATGTCTCACGGGACAGAGAGAGCTCAGGGAATTACTTTGGAATGGACCTATATCTTTATCATCTGTATCTCTAATAGACAGAGAAAGCAAGAATCTAACATCATCCATAGACATAATTGAATTAAATAAAAGAGTCAAAACATTCAGTGTAAAAAACAAATCAATTTCAAAGAATTTATCAAAAAAGTTTCGTCATTTCAAACTACCGGAAATTGAAGAAATCAAAGTTGATTATGATAGCGATACCTCAATAGATGATAAAAATCTGGCTGTAATCAAAAATGAAATGCTAAATAAAGAATCCAAAGTTGTTAAAAAACAAAATGACCAGTTAATTGTCAAGGAAGAAACAATCCCAAGTCTAGATATACAATACAGTGGTGATGATGAAATGAATTCGGAAAGCTATATGGATGATGATAAAACGGAAATCAAAGGTGAAGATTCTCATCACCAAATGTTGGTTGATGAAGAAAATATGAGCTTTGATCTTCCTTTTAATGATGAGAAGGTGATTGAGAATGGTAATGAAGAGAAAATTATTAAAAGTAAAGTAAAAGCGAAGAAATTTGAGATTATTGAAGAGAATAAAAATGATTTGGATCCGAGTCATTGGTTTAAGATAAATTTGAATGAGGAAGAAGCTTTGACGGAGTTTAAAGCGAGAGCTCAAGAGCCTAAGTATTTGACGGCGGCGTATAAATGTGAAGACTGTTTCAAAGGTTTCTCTAAAGAGGATATGTTGAATAGACATATCAAGCTAAGGCATAGTGAGTCTCTAGGCCCGATTGAGTGTCACTTCTGCAACATGCGTTTCAAACTGAAGTGTTACCTAACGCGGCATATAACACAACACTACACGAAGTATAAGTGTCTGCGGTGCGACCTCATGTGTCCTTTGAAAAACACGGCGTTATTTCACAATGATTATCACAATGGTGTTATCAGAAAATGTATGCATTGCGGAGAGGATTTCAGGCATTTGTCAACATACTACACGCACCTGCGCACGCACCGCAGCGAGCACGTGTGCACGCTCTGCGGGGCCTCCTTCGTCAGCGCTAAAGGACTAAACATGCATAAAAGAACTATGCATGTCAATACTGTTAGTAACCCTGAAGCAGTGAATGCTTACTGTGAACGCTGCAACATGAAGTTCGACTCCCAGAAGGCTTACGAGGAACATTTGTACCACTCCGCTATGCATGCCGAAGGTGTAGAGGATATAGCAAACGAAACTCCAGCGAAATCAATACCTAAGAATCGTAAGAAAAGTCTTAGAAGAAATCCAAGGAAATTCACACCATGTACGATATGCAACAAAAACTTCTCAACTCAAACAGCGTACATGAAACACCATCTATCAGAACATAAAGACGAGCCGATACCTTCCAAAGACAACGAGCGACACATCTGCGAGATATGCGGGGTTTCTCTAGCGGCAAGCAGTGTTGCCAGTCACCTGAACACTCACACCCGTGAGAAGCTGTACACGTGCAGCACGTGCGGCATGCAGTTTAACAGCAAAAGCAGCATGACTCGACATCAACTAACACACACCGGAGAGAAACCTTATAGCTGCACGCTTTGCGACAAGCGGTTTACGCAGAAATGCAGTATGAAGCTACACTATCGTACTTTCCACCTCAAAGAGCCGTATCCCAAAAGAAACAGAAGAAAAAAGGGCGGGAACCCACAAGAAGCGTTAGAAGATTACAGAAATGAGGAAGACTCTGAAGATAATTTGAAGGTCGATGAATGGCGTTAG
Protein Sequence: MSDLEICRICLSKDVKVYSYKLYNLKQFYEDIMRTKIDEDGLPRFFCYQCAAMLYKYHKFKEKCLTGQRELRELLWNGPISLSSVSLIDRESKNLTSSIDIIELNKRVKTFSVKNKSISKNLSKKFRHFKLPEIEEIKVDYDSDTSIDDKNLAVIKNEMLNKESKVVKKQNDQLIVKEETIPSLDIQYSGDDEMNSESYMDDDKTEIKGEDSHHQMLVDEENMSFDLPFNDEKVIENGNEEKIIKSKVKAKKFEIIEENKNDLDPSHWFKINLNEEEALTEFKARAQEPKYLTAAYKCEDCFKGFSKEDMLNRHIKLRHSESLGPIECHFCNMRFKLKCYLTRHITQHYTKYKCLRCDLMCPLKNTALFHNDYHNGVIRKCMHCGEDFRHLSTYYTHLRTHRSEHVCTLCGASFVSAKGLNMHKRTMHVNTVSNPEAVNAYCERCNMKFDSQKAYEEHLYHSAMHAEGVEDIANETPAKSIPKNRKKSLRRNPRKFTPCTICNKNFSTQTAYMKHHLSEHKDEPIPSKDNERHICEICGVSLAASSVASHLNTHTREKLYTCSTCGMQFNSKSSMTRHQLTHTGEKPYSCTLCDKRFTQKCSMKLHYRTFHLKEPYPKRNRRKKGGNPQEALEDYRNEEDSEDNLKVDEWR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00186620;
90% Identity: iTF_00186620;
80% Identity: -