Agaa016111.1
Basic Information
- Insect
- Autographa gamma
- Gene Symbol
- -
- Assembly
- GCA_905146925.1
- Location
- LR989875.1:817047-824876[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.009 0.81 10.8 0.1 1 23 217 239 217 239 0.97 2 12 0.00056 0.051 14.6 6.8 1 23 245 268 245 268 0.93 3 12 0.58 53 5.1 0.8 1 23 282 304 282 304 0.89 4 12 9.9e-06 0.0009 20.1 2.9 1 23 542 564 542 564 0.98 5 12 0.022 2 9.5 2.8 2 23 570 592 569 592 0.96 6 12 0.00054 0.049 14.6 5.5 2 23 601 622 600 622 0.96 7 12 3e-05 0.0027 18.6 1.4 2 23 626 647 625 647 0.97 8 12 0.097 8.8 7.5 1.7 2 23 661 683 660 683 0.96 9 12 3.1e-05 0.0028 18.6 1.7 1 23 689 711 689 711 0.98 10 12 0.024 2.1 9.5 1.6 2 23 718 739 718 739 0.96 11 12 0.0002 0.018 16.0 1.1 1 23 745 768 745 768 0.97 12 12 0.00046 0.042 14.9 2.8 1 23 772 795 772 795 0.96
Sequence Information
- Coding Sequence
- ATGGACGAAGATAGTTTTCTTAAATACGACATTAGGATTACAAATAAAACTGATTCGACATCGTTTAAGAACCTGCTGCGGTCGACATCGCCGTCTATTCCGGATGACATCGATACAAAGATCAGTGACGAACCAGTATTGAAATGCGAGCCATTGACTACTAAGGCGGCAGTTGAATACTTATTTAATGGGAAGCTTAAGTCTGCTGTGTGTCGGTACTGCCTTCACACATCGCCTGGACTGTCGGAGCTAGATACCGTGCTGCGGATACCGGGCACGGATACCGTGTACAGAGTGTCCATAAGGGAAATTATAGCCTGTTTCTATCCATTCAAGGCCAGCGTAGACCCAAACTTACCAGAAAAAATATGTCAGAAATGCTTAGACAGGGCTCTAAGTGCATACTTCTTTACACAGCAATGTGAAAGAGCTGAAAGAGCTCTACGTAACTGTTTTGATGACGTGTACACAAAGTTAGAAAACCTCGATCCAATAGATAAGCCAAAAAGGAGGGGGCGCCAGAAAGTCAATCCAAACTACAATGTTATATACACACCCCACAAATACGTCATAGATTATGCAGAACCATTGGTACATTTAGTAAATTGTGGTTCAGAATCATTGTCAAAAGAACCAGAATGGAATGAACATGAATGTAAAATATGCTGGCAAGTTCTCCCAGATGTAGATGCATTACTTAACCATCAGAAAGGCCATCCAAGTTACATGTGGTACCACTGTCGGTTATGCGGTAAATCTTTTCCAAGGCTAAACCATTTGAAAAAGCACCACACTCAAATCCATATGCTTCAGAAAGCTCCTAAGTCGGCAGAAGAGAAACATTTCCGATGCAATGAATGTGGGAATGCGTCAGCAACTTATTCAGAGCATTTGCAACATGTGGAGAAACATAAGTTTAAGACGGTCATGCAGCACGTTATAGAGAAGAAAACGGACCAACTCTGTTTGGTTTGTTTAGACAAGAGTATGGACTTAGTGGATATGGATGAAATGGTCTGCATCCATGGTGGACATCCAGAACTGATGGGGGATAAGACATTGTACACGTTGTTGTCGTCAACTCTACCTGATATGAATTACCGACACAACTTCTTCGGGAGGAAAATATGCGAAAAGTGCCTTAACCAAGCTATCACCTCATACATATTTATAAACCAGTTTACGTGCACTCGGGAACGGTTAGATTCCTGCGTTAGTCTCATGCTCGAAAGCCTAAGTATGATCAAACCAGAAGCCAATGTATTTGTCCAAATATCTCAGGATGTCATCATGCTTTCGCACGAAGAAATAGATGAAACTCTACTCCTAGATGACGAAGATATTATTGACGAGGATCAGATCAAAGTAGAAGTTTTAGAAGACGAATACAGAATGAAGTCGGATAGCGAAAGCGAACCGGAAATTAAAAATGAACATCAAATAGTAAAACATAATGAAATCTTTGAATATAGCGAGGATATTGAAAATCCTGCCAAAAATGCCACGAAAACATACTCTAATAAAAGACTCGTTAACGGCTTACAAAGCCAATACCCAGTTGATGTCTGCAGTGAATTCTTAACATTCAACAAGAAAAAGAAAATCAAGAAAGTTAGGTGTAAATACACATGCCCTTTGTGTAATAAACACTTCATAACCGAATATTTTCTAAAGAGACATATTATCAAACACGTAAACACTAAAGTTCAGTGTAACACTTGCCAAAGTAATTTCAAATCAAAGTTCTACTTATACGAACATACGAAAATGAAGCATTTGTTAAATATCAATAATTTTAAGCCGTGCAATATTTGCGGCAGATGTTTTACTAGCGTTGATAAATTACGGACCCATAAGAAACACCATAAGACCAAACCTTGTGACCTCTGCAACAAGATCTTCGCGACACAATACCATTATGAAAGTCATATCCAAAGACACTCCGACAAATTAAAACTAATCAAACAAAAGAGAGTGCAAACCTGCAGTTTCTGCGAGAAGGAGTGTTCAAATGATAACGAACTCTCTCTTCATGTCAATAAAGTACATTTACAAATAAAACCCTACAGTTGTGACATGTGTGATCGACAGTTTTACACTGAAAACAATTTGAAGAACCACAAACAAGTACACAGCATGCCCTCGAAGGAATCTTGTACATTTTGTAACAAATTACTTAAAAGTAGGAAACAATTAGTCATTCATGTTCGACAACATATCGGTGTAAAACCTTTTAGCTGTCAAATTTGTGGCCAAGGGTTCTATTCTAATTTCAAAGCAAGACAACACATGAGGGTATACCATGGCGGCAGATTTTGTTGTAGAATTTGTAAATCCACTTTTGTAACGAAAAGTGAGCTCAAAGAACATGTAAATAAGGCTCATAGTATCATGTAG
- Protein Sequence
- MDEDSFLKYDIRITNKTDSTSFKNLLRSTSPSIPDDIDTKISDEPVLKCEPLTTKAAVEYLFNGKLKSAVCRYCLHTSPGLSELDTVLRIPGTDTVYRVSIREIIACFYPFKASVDPNLPEKICQKCLDRALSAYFFTQQCERAERALRNCFDDVYTKLENLDPIDKPKRRGRQKVNPNYNVIYTPHKYVIDYAEPLVHLVNCGSESLSKEPEWNEHECKICWQVLPDVDALLNHQKGHPSYMWYHCRLCGKSFPRLNHLKKHHTQIHMLQKAPKSAEEKHFRCNECGNASATYSEHLQHVEKHKFKTVMQHVIEKKTDQLCLVCLDKSMDLVDMDEMVCIHGGHPELMGDKTLYTLLSSTLPDMNYRHNFFGRKICEKCLNQAITSYIFINQFTCTRERLDSCVSLMLESLSMIKPEANVFVQISQDVIMLSHEEIDETLLLDDEDIIDEDQIKVEVLEDEYRMKSDSESEPEIKNEHQIVKHNEIFEYSEDIENPAKNATKTYSNKRLVNGLQSQYPVDVCSEFLTFNKKKKIKKVRCKYTCPLCNKHFITEYFLKRHIIKHVNTKVQCNTCQSNFKSKFYLYEHTKMKHLLNINNFKPCNICGRCFTSVDKLRTHKKHHKTKPCDLCNKIFATQYHYESHIQRHSDKLKLIKQKRVQTCSFCEKECSNDNELSLHVNKVHLQIKPYSCDMCDRQFYTENNLKNHKQVHSMPSKESCTFCNKLLKSRKQLVIHVRQHIGVKPFSCQICGQGFYSNFKARQHMRVYHGGRFCCRICKSTFVTKSELKEHVNKAHSIM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -