Agaa016112.1
Basic Information
- Insect
- Autographa gamma
- Gene Symbol
- -
- Assembly
- GCA_905146925.1
- Location
- LR989875.1:830549-833495[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.012 1.1 10.4 0.3 1 23 248 271 248 271 0.94 2 19 0.0002 0.018 16.0 4.6 1 23 276 298 276 298 0.98 3 19 2.7 2.5e+02 3.0 0.8 3 23 303 322 302 323 0.82 4 19 0.079 7.2 7.8 2.1 1 23 328 351 328 351 0.95 5 19 0.0014 0.13 13.3 0.5 2 23 412 434 411 434 0.95 6 19 0.00066 0.06 14.4 1.2 1 23 440 463 440 463 0.92 7 19 0.0039 0.35 11.9 0.7 2 21 467 486 466 487 0.93 8 19 0.0046 0.41 11.7 0.3 1 23 495 518 495 518 0.93 9 19 3 2.7e+02 2.9 2.3 1 23 523 546 523 546 0.92 10 19 0.014 1.2 10.2 0.1 2 23 559 580 558 580 0.91 11 19 0.0012 0.11 13.6 2.3 1 23 586 608 586 608 0.97 12 19 4.9 4.4e+02 2.2 0.4 2 12 614 624 613 630 0.83 13 19 0.00087 0.079 14.0 3.3 1 23 644 666 644 666 0.97 14 19 0.0062 0.56 11.3 0.3 2 23 671 692 670 692 0.93 15 19 0.00025 0.022 15.7 0.2 2 23 709 731 708 731 0.96 16 19 0.0019 0.17 13.0 3.8 1 23 737 759 737 759 0.98 17 19 0.0017 0.15 13.1 6.0 2 23 766 787 765 787 0.96 18 19 0.00016 0.015 16.3 2.0 1 23 793 816 793 816 0.97 19 19 2.2 2e+02 3.3 1.9 3 23 823 844 821 844 0.94
Sequence Information
- Coding Sequence
- ATGGAGGTTTCAGAACAGCCGCAAATGGATTCCAATAATGTGGACTGGGTCAAGAATAAATTAAAGACGGTATGGACATCACCGAAGTTCTGCGGTCTTTGTCTGGAGAGCGGAGGAAACTTCTGTTCCATAGATATGGAGCTGGTCATCAATAAGCAGACGTTCTCCAAATGTCTGCAAGATATCATTAATTATGTTTTTAATGAAGATATTGAAGAACTCATGTCAAGCCACCACATTTGTGATAGTTGCACGGAAAAGACAATACAGGCGTACATCTTCATTCACAATGCGAAACAGCTATCAAAAATCATGAGCAACTGTGTCTCGGACATATACTCCAAAGTGATAGACATTACGGAACAGTTGGATGACCAAACACAATACGATAACTCAAATGTCATGATAGTCCTAGAAAATGATACAGATCTGTACAAAACTGTCATTGATGTTAAATCCACGACCGAAATCATACCTACTTCCAAACCAATAGCAATGAAGGAGGAAGTCCTACCGAAGCCTAACTTCATAGAGCAAGCCTTACCTAAAAAAGCTGTTGAGGAACCAGTGAAAGTGAAAAAAGAAATAGATATAAAACCAAAAGAGGTTAAAGTTGTTAAAGAGAAGAAAGGGCCGGTGACACACTCAAACACACCAAATATTTACCTCCAACAAGGTCATATAGTTGTGAAACCGCTTAATACATTGAGGAGCTCAACAACAGTACCTCGGTTCAACACCTATGAATGTGCAGATTGCCCCGATATATTCACTACCTACAGATCTTTGAAGGAACATGAAAAAGCTAAACATAAAAAGTCTGTATTTCATTGTAAGCTATGCGACAAATCTTATAATACTCTGCAGTATTTAAATATTCATTATAAGACACATGCAAAAGCTAGATGCAAGTTGTGTCAAGTTATTTTACCAGAAGAGGAATTAATGGAACATTTACGGACACACCACAAGAATTTAGTGTACCCGTGTAAGTTTTGTGAACTTGTGTACTACACCCAAGAGTGTTTGGACACACATTTCAATATAAGCCATTTAGTCAACAACACCAGAGCTAAATCTCAATGTATTATGTGTTTAAGAAACTTCATGGATTCAGAGTTAAAGAAACATAAATGCAAGTTTGCATGCTCGGAGTGTTTTGTTATGCCGTGCATCCACTATAAGTATTTAATGTCTTATAGAGAACAGTTCTTGAGTCACGTGAATAAGGTGAAATGTGTTGATTGTGATTATGTTACGCGAAGGAAAGAGCATTTGATAGGACACGCCAACCGAGAACACTTAGACCACCATCCGTTCACTTGTGCGGATTGTGGACAACAGTTCTACACAAAATTGAGTTTGAAGACACATTTAGTACAGTTCCACCAAGATTTACACTGTCCTTACTGTGATTTTGAATTTAAAGATACAAACACTTTAGAAAATCATAAGAAAGCTTGTAAGAATGTTATTCGGGCGTTTGCTTGTGTACATTGTAAGGCCTCGTTTGATGTGGCCGAGGATTTGACGAAGCATGAAAACTTGATGCATAATGATGGCGTCCATGCTTGCAAACTGTGTAAAGGCAGGTTCCTGACCAACATACAGCTGCAAGAGCACCATGCGAGAGTTCACGGAGGCATACAGTGCAAGAAGCGAAGGAAACATATAGAGTGCTCCCTATGTGATATTATGTTTAAGACTATAAAGGAACTACTCCAACATGAAGTATTGCACAACCCAGATGATGTATACCCTTGCAAAATATGTTCCAAACAGTTTAAATCTCTTAGAAAACTATACATACATAATCAAAGGCATTATACTACTAGAACGAAATGTTCTGGCTGCAATAAAAAGGTAGCTTCCTCATTTTTCGCTCAGCACGCTGTCAGGTGTCCGTACAAAAATGATGCAGTTTTAAGCCATGTTTGTGAAGTTTGCGGGAAATCATTCCATCTGCAATCTCTGCTCCGTTTCCACCAAAGAGTTCATTCAGAGCCAGTAAAATGTCCCTATTGTGATAAAATGATAAAGCCAACCAGTCTGAAGAGACACTTGGAACAGCTCCATCCAGATAACTGTGTTAAGGTGCCGACGGGCCCAAGCAAGCCGTCAATAGAATGTGAGTTGTGTGGACATGTAGTGCGAAAGAAAGTTGATTTAGAAGCCCACATGAACCGGTATCATTTGAAGATCAAGCCTTACGTGTGTCATATATGCAGTAAAGACTTCTGCGGTAAGATCCGTCTTAAAGAACACATCACGACCCATACTACAGACAATAGCTGCTTCTGTTCAGTCTGTGGAAAGAAATTTGCTAATCGTGTATGCCTCAAAATGCATTTTAGAATGCATACTGGTGTTTTTCCATATTCTTGTGATATTTGTGAGCAGAAATTTAGGTCTTCAAGTATGATGAAGACTCATAGATTAAAGCAGCATTCAGAGAAGAATGTGAACTGTCCTTTGTGTGATAGTAAATTCTTCATGGTTCGCGATATGAGGCATCATTTTAAGAAAGCGCATTGGAAGGTGAACGATGGAAGGGCGTTTGATCCGCGTGATGTGCCAGAGCTGCCCAAGGAGTACTACCACCTATTTGAAGATAGGAGGCTGCCGAAAATATCTTAA
- Protein Sequence
- MEVSEQPQMDSNNVDWVKNKLKTVWTSPKFCGLCLESGGNFCSIDMELVINKQTFSKCLQDIINYVFNEDIEELMSSHHICDSCTEKTIQAYIFIHNAKQLSKIMSNCVSDIYSKVIDITEQLDDQTQYDNSNVMIVLENDTDLYKTVIDVKSTTEIIPTSKPIAMKEEVLPKPNFIEQALPKKAVEEPVKVKKEIDIKPKEVKVVKEKKGPVTHSNTPNIYLQQGHIVVKPLNTLRSSTTVPRFNTYECADCPDIFTTYRSLKEHEKAKHKKSVFHCKLCDKSYNTLQYLNIHYKTHAKARCKLCQVILPEEELMEHLRTHHKNLVYPCKFCELVYYTQECLDTHFNISHLVNNTRAKSQCIMCLRNFMDSELKKHKCKFACSECFVMPCIHYKYLMSYREQFLSHVNKVKCVDCDYVTRRKEHLIGHANREHLDHHPFTCADCGQQFYTKLSLKTHLVQFHQDLHCPYCDFEFKDTNTLENHKKACKNVIRAFACVHCKASFDVAEDLTKHENLMHNDGVHACKLCKGRFLTNIQLQEHHARVHGGIQCKKRRKHIECSLCDIMFKTIKELLQHEVLHNPDDVYPCKICSKQFKSLRKLYIHNQRHYTTRTKCSGCNKKVASSFFAQHAVRCPYKNDAVLSHVCEVCGKSFHLQSLLRFHQRVHSEPVKCPYCDKMIKPTSLKRHLEQLHPDNCVKVPTGPSKPSIECELCGHVVRKKVDLEAHMNRYHLKIKPYVCHICSKDFCGKIRLKEHITTHTTDNSCFCSVCGKKFANRVCLKMHFRMHTGVFPYSCDICEQKFRSSSMMKTHRLKQHSEKNVNCPLCDSKFFMVRDMRHHFKKAHWKVNDGRAFDPRDVPELPKEYYHLFEDRRLPKIS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01487975;
- 90% Identity
- iTF_00186568;
- 80% Identity
- -