Basic Information

Insect: Autographa gamma
Gene Symbol: -
Assembly: GCA_905146925.1
Location: LR989862.1:2107650-2110977[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 3e-06 0.00027 21.8 1.7 1 23 239 261 239 261 0.98

2 9 2.8e-08 2.6e-06 28.1 1.6 3 23 269 289 267 289 0.98

3 9 9.6e-05 0.0087 17.0 0.3 1 23 295 317 295 317 0.98

4 9 1e-05 0.00094 20.0 1.7 1 23 323 345 323 345 0.99

5 9 2.1e-05 0.0019 19.1 1.7 2 23 520 541 519 541 0.96

6 9 2.7e-09 2.5e-07 31.3 1.6 1 23 547 569 547 569 0.98

7 9 0.0023 0.21 12.6 0.6 3 23 577 597 575 597 0.97

8 9 6e-05 0.0054 17.7 1.5 1 23 603 625 603 625 0.99

9 9 0.018 1.7 9.8 0.8 1 23 631 655 631 655 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	3e-06	0.00027	21.8	1.7	1	23	239	261	239	261	0.98
2	9	2.8e-08	2.6e-06	28.1	1.6	3	23	269	289	267	289	0.98
3	9	9.6e-05	0.0087	17.0	0.3	1	23	295	317	295	317	0.98
4	9	1e-05	0.00094	20.0	1.7	1	23	323	345	323	345	0.99
5	9	2.1e-05	0.0019	19.1	1.7	2	23	520	541	519	541	0.96
6	9	2.7e-09	2.5e-07	31.3	1.6	1	23	547	569	547	569	0.98
7	9	0.0023	0.21	12.6	0.6	3	23	577	597	575	597	0.97
8	9	6e-05	0.0054	17.7	1.5	1	23	603	625	603	625	0.99
9	9	0.018	1.7	9.8	0.8	1	23	631	655	631	655	0.95

Sequence Information

Coding Sequence: ATGATTAGAAACCTGATAGGTGTACGGTGGCTGTCACAACTGTCAAGCGCGACGCAACCCAGTTCCCATCACTATTTGGATACGACAACACCATACGTCCTCTACAAAGATGGCGTGGAGCGAGCCCCCCCGGGCACGCAGTGGGGTGGCGGCGTGCTGGACGGCGGCTACCAGCCCATGCAGCACCAGAGCCCCGGCGGGCCCTCCCCGCAGCCCGAGCCGCAGCTGGCGTCGCCGGCGCCCTCGCCCTACCCGCCCGCGCCGCCGCCGCCCGACCCCACCTCCGCCGAGGACGCCGCCCAGCAGCTCGCCCAGCAGCAGGCACAGCAACAGGCGCAACAACAAGCACAGCAGCAGCAGCAACAGCAACAACAACAGACTTCTCCCGAGCACATGCAAGTGGAGCAACAGCTCCAGAGCCAGCCACAACCACAGCCGCCTTCCCAGGACCATCTCGACCGGACGCCATGCTTCGTGCCCCAGCCTGACCTTCAGCAGCAATACACGCCTTACTTTAAGGAGGCGAGGCCGACGAGCCACATGCTAGGCACAGGCGGTTTTCCACTTCACTACCTAAAACAAAACGGTGGTGTGCTATCCCTAGAAGGTCCGCTAGACCAGTACGCGGCGCCAGACCTGCGCCACCTGCCAGACATAGTGCAGCCTGAGCCGCCGAAGCCGCGCAAGCACAATCCCAACTCGGAGCTGCGCCTGTTCAAGTGCTTGACTTGCGGCAAAGACTTCAAGCAGAAGTCGACGTTACTGCAGCACGAGCGGATCCACACGGACTCGCGGCCGTACGGGTGTCCCGAGTGCGGCAAGCGGTTCCGGCAGCAGTCGCACCTGACGCAGCACCTGCGCATCCACGCGAACGAGAAGCCGTACGCGTGCGTGTACTGCCCGCGCTCGTTCCGGCAGCGCGCCATCCTCAACCAGCACCTGCGCATCCATTCCGGTGAGAAGCCATATACGTGCGGCGAGTGCGGCAAACATTTCCGCCAGAAGGCCATCCTGAACCAGCACGTCCGCACACACCAAGGCGAGCGCTATTCACACATATATACCCCCCGGCCCCCGCGCGCGCCGCCCGCACTGACCGCGCGTCACTGCCGCCGGCGCCCGCGCTCCCGCCGCCCCGCACCGTCGTCTCGGTCTCGCATCCATTGGCCTTCCTATCGAACAAATTCTCGGTCCTCTCGTCGCCCGCACCGCGGAGGGCGCTCGCGAGACGCGGAACCGACCGCCGGACGCTCCCACGTATCGCCACATCTCATCTTTAAGAATGGGACAACTCCGACTCTATGGCCCCAGGACGTGCCGTTTCCAGCTGATGAGAACAAGGAGGAGGTGCAATCGACGTACGGCGACGCCGACGGACAGAACGGCGAACAGCGCGGCTCCTGTTTCTCTCCCGGCGACACTGCGCAGTACCCTGCTTACTTCAAAGATACAAAAGGCCTCAACCACTCAGTCTTTAGCTCAGGCCTGTCTCTGCAATACTTAAAAGGGGGTAAGTTACCAGACGTGCTCGGTGGACGGGCGATGCCCCTGTATGTACGCTGCCCAATATGCCAAAAGGAGTTCAAGCAGAAGTCAACGCTGCTCCAGCACGGATGCATACACATAGAATCTCGCCCATACCCGTGCCCAGAGTGCGGTAAACGTTTCCGACAGCAGTCACATCTCACGCAGCATCTACGCATTCATACCAATGAGAAACCATATGGCTGCGTGTACTGCCCACGCTTCTTCCGCCAGCGGACGATCCTCAACCAGCACTTGCGCATCCACACCGGCGAGAAGCCCTACAAGTGCACCCAGTGCGGCAAAGACTTCAGGCAGAAGGCCATCTTAGACCAGCATACGCGGACGCACCAAGGTGACCGACCATTCTGCTGCCCCATGCCCAACTGCCGGCGGCGCTTCGCCACGGAGCCGGAGGTGAAGAAGCACATCGACAACCACATGAACCCGCACGCGGCCAAGGCGCGGCGGGCCGACGCCAACAAGACCCCGCGGCCGCTGCCGCCCGCCGCCGCCGTGGTCAAGCCCGAGCTGTACTTCCCGCAGTGCTACGCGCCGCCGTTCCAGCAGTTCCCGGGCGCGGGCACGGAGTTCAAGCCGGCCGTGGGCCCGGCGCCCGTGGCCTGCCTGCCGGCGCAGTGA
Protein Sequence: MIRNLIGVRWLSQLSSATQPSSHHYLDTTTPYVLYKDGVERAPPGTQWGGGVLDGGYQPMQHQSPGGPSPQPEPQLASPAPSPYPPAPPPPDPTSAEDAAQQLAQQQAQQQAQQQAQQQQQQQQQQTSPEHMQVEQQLQSQPQPQPPSQDHLDRTPCFVPQPDLQQQYTPYFKEARPTSHMLGTGGFPLHYLKQNGGVLSLEGPLDQYAAPDLRHLPDIVQPEPPKPRKHNPNSELRLFKCLTCGKDFKQKSTLLQHERIHTDSRPYGCPECGKRFRQQSHLTQHLRIHANEKPYACVYCPRSFRQRAILNQHLRIHSGEKPYTCGECGKHFRQKAILNQHVRTHQGERYSHIYTPRPPRAPPALTARHCRRRPRSRRPAPSSRSRIHWPSYRTNSRSSRRPHRGGRSRDAEPTAGRSHVSPHLIFKNGTTPTLWPQDVPFPADENKEEVQSTYGDADGQNGEQRGSCFSPGDTAQYPAYFKDTKGLNHSVFSSGLSLQYLKGGKLPDVLGGRAMPLYVRCPICQKEFKQKSTLLQHGCIHIESRPYPCPECGKRFRQQSHLTQHLRIHTNEKPYGCVYCPRFFRQRTILNQHLRIHTGEKPYKCTQCGKDFRQKAILDQHTRTHQGDRPFCCPMPNCRRRFATEPEVKKHIDNHMNPHAAKARRADANKTPRPLPPAAAVVKPELYFPQCYAPPFQQFPGAGTEFKPAVGPAPVACLPAQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01078408;
90% Identity: iTF_00888518;
80% Identity: -