Agaa022162.1
Basic Information
- Insect
- Autographa gamma
- Gene Symbol
- -
- Assembly
- GCA_905146925.1
- Location
- LR989876.1:4589491-4591791[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.2e-09 1e-06 28.8 0.0 1 37 23 59 23 62 0.93
Sequence Information
- Coding Sequence
- ATGAAGCCTTGTCAGAAGAAGTCTAGAGAAAAAAATAGTAAAAAATGTTTTAAACGGAAAATTTATACAGAAGAGAACCTACAAAAAGCTCTCCACGAAATATCAAAAGGCATGAGCAAAAAACTTGCTGCAAAAACCTTCAGCGTACCTCGGTCTACTATACAATTTAGATTGAAACATCCTGATCATCGCTCTAAGCCCGGTCCGTCCACAATTTTAACTGACGAAGAAGAACAGCTTTTTGTTGACTGGATAAAAATCAGTAGCAAAAAAGGGTTTCCGAAGAGGAAAGAAGATTTGATAAAAAGTGTTTCAGACTTTATCAATAAATCGGGGAGAGCCAGCAGTTTTAAGAATGGTGAGAAGTGGTTCAAATTGTTTTTAGCTAGACATCCAACAGTTACATTTCGAACACCAGAAGCCGTAACAGCTGCCAGCTCCACGGTCTCTGCATCTGATGTAAGAGGCTGGTTTGAACAAATAAGGATTTACATGACTGAAAACAGCTACTATGACATCTTAGCAGACCCATCAAGAGTATTCAATGGCGATGAAACGAATTTTGTTCTATGTCCAAAAACAGGTATTGTTTTAAGCTCTAAGGGAGAAAAAAACGTTTACGAAATTGACCACGCCCAAGCCAAAACTTCACTAACCGTCATGTTTACTTTTGGTGCAGATGGTCAAGTTACTCCGCCAATGAAAACTGTCCTAGAATGGCGAAGAAATAATCCATCTCAAGCGTTAACGAAAACTCAATTTGTGCCATTACTTAAAGATACTATAGAAAAAAGTCTTAACCCGTCAACAATTATAAATGGTTTTAGAGCAACTGGACTTTGTCCTTTTAATGAAGATGCAGTGGACTATTCCAAGTGCTTAGGAACTTCAAATAAAAATGACATTACCATAGCGCAACCCAAGCATGTAACAGACAATCGGGTGCTCACCAAAGATGACTTTATGAAGTTGTTGGGAGAAAGTGCAATACATAAAATTGATAAAAGAGAATTGAGGCCAGAGGAGTCAAGTGAGTGTTTATTGAAAATTTGGAATTTCTTTACCACGTCTCAAAATGATTTGCAGAATAGCTCAATATTAGACACAGAGCGTCAGAATGACAATATAGGGAATTTTGATATTGAAAATATGGAGATAATTATCAATAACTCTCCAAACAAAAATGTTGCTGAGCAAAGTTTAGATTTTGTTTCACAAGATGTTGTTGTTGAGGAAATAGTCCAATGTTCTGAATTAAATTATTTTATAGAAGATTTATCAACCCTACAAGAACCTATTCCAGAAACAGTTAGCCAACAACCACACAATCGTCTTTCACCCACTCAACAAGCATTCAATCAGCCAGAATCCATAGAGCAAGTATCCTCTCAAAAAGCCTCTACTTCTTTACAGCATACTTCGATCTTACAGCCATCATTCACTCACGTACCAAGCAACAAACAACAATCCACACAGCAAACATTTGTTCAACAAACACCTATCTACCAAACGTCCGTTAGCAGTCAGCAGCAATCATCAATTTATTCAACTCCCCAAAAACCGTCTATCAGAGTAACTGGAGATGTCAAAATAGGTGCAGATCAAAATAAGTTTATGCAACTGAAAGTACCACTGGTTAAGGAAGACAATACTATAGTAAAATTACAAGATATTTTGGTACTTCCTAAAACGCCACAAAGAAAAGGGATAAAAAATACCAAGAAGACGCCTTTTGTACTAACGTCTGCCGAATGGAAAGCTCAGGAAAATGAAAAAATTAAAATTAAAGAAGAGAAAGCAGAAGGTGTTAAAAAGAGAAAAGAAGAAAGAGAACAAAAGAAATTGGAAAAAGAAAAGAAAATGGTAAAGAAAAACAAAAAACAAACTAAAGCCAAAGACGTGTCCAAAATTTTGTTTTCGGAAGATTTCTATAAACTTGACAATGGCAAATTGGAAGCTGTACTTAAAAATTAA
- Protein Sequence
- MKPCQKKSREKNSKKCFKRKIYTEENLQKALHEISKGMSKKLAAKTFSVPRSTIQFRLKHPDHRSKPGPSTILTDEEEQLFVDWIKISSKKGFPKRKEDLIKSVSDFINKSGRASSFKNGEKWFKLFLARHPTVTFRTPEAVTAASSTVSASDVRGWFEQIRIYMTENSYYDILADPSRVFNGDETNFVLCPKTGIVLSSKGEKNVYEIDHAQAKTSLTVMFTFGADGQVTPPMKTVLEWRRNNPSQALTKTQFVPLLKDTIEKSLNPSTIINGFRATGLCPFNEDAVDYSKCLGTSNKNDITIAQPKHVTDNRVLTKDDFMKLLGESAIHKIDKRELRPEESSECLLKIWNFFTTSQNDLQNSSILDTERQNDNIGNFDIENMEIIINNSPNKNVAEQSLDFVSQDVVVEEIVQCSELNYFIEDLSTLQEPIPETVSQQPHNRLSPTQQAFNQPESIEQVSSQKASTSLQHTSILQPSFTHVPSNKQQSTQQTFVQQTPIYQTSVSSQQQSSIYSTPQKPSIRVTGDVKIGADQNKFMQLKVPLVKEDNTIVKLQDILVLPKTPQRKGIKNTKKTPFVLTSAEWKAQENEKIKIKEEKAEGVKKRKEEREQKKLEKEKKMVKKNKKQTKAKDVSKILFSEDFYKLDNGKLEAVLKN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00185253; iTF_00932421; iTF_00000264; iTF_00000263; iTF_00185256; iTF_00185254; iTF_00185255; iTF_00850606;
- 90% Identity
- iTF_00185253; iTF_00000264; iTF_00000263;
- 80% Identity
- iTF_00185253;