Agaa019125.1
Basic Information
- Insect
- Autographa gamma
- Gene Symbol
- -
- Assembly
- GCA_905146925.1
- Location
- LR989865.1:5374397-5376293[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 2.1e-10 1.8e-07 31.3 0.1 4 43 137 175 135 176 0.92
Sequence Information
- Coding Sequence
- ATGGAAGGCGTTCAGCTTCAGGGGGATGAAGAAAATATGGCAAGAATTATGTTACTAAAAATGAAACCTGGAAGAAATTTGGGCCCACTAAAGCTTTGGTCTGGTGATCATGACGCACAACGCTGCGGTATGCGGCATGCGTTGCTGGACACCATAGGAAAAACGTCGAAATGTTCTCTTGTTCTGTCGCAGTATGCGTCAACGGCGAGGGGCAAGCGTGGTGAAGTGGGGAGGTCAAGGTGTACAGCCGCACAGCGCGGCGTCATTCTCGGTTCAACGCTGCGGTGTGCGTCACGGAAGGACGCTAAGCCACAATACTTAGCTAAAAGGACTATCTGCTCTCGCGTCCCACCCCCGCTCTGTGGTGTCCTTAGCGGCCCATACCTAGCTATGACTGATAGACAGAAGGCCATACTAAAGGCCATGGAGGCGGTCAAGAAAGAAGCCTCAATTTCAGCTGCTGCCAGGCATTTCGGTATCCCACGGTCGACGTTGGATGACAAAGTACGTGGCCGCTATTCTGTCGAATGCTCCAAAGGACCGGCTACAGTTTTGACGAAAGAAGAAGAAGTATATTTAAGCAGTTGGATTATTTTTATGGCAAATAGTGGGTATCCAACTATTTGCCATAAAAACTAA
- Protein Sequence
- MEGVQLQGDEENMARIMLLKMKPGRNLGPLKLWSGDHDAQRCGMRHALLDTIGKTSKCSLVLSQYASTARGKRGEVGRSRCTAAQRGVILGSTLRCASRKDAKPQYLAKRTICSRVPPPLCGVLSGPYLAMTDRQKAILKAMEAVKKEASISAAARHFGIPRSTLDDKVRGRYSVECSKGPATVLTKEEEVYLSSWIIFMANSGYPTICHKN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -