Agaa009264.1
Basic Information
- Insect
- Autographa gamma
- Gene Symbol
- -
- Assembly
- GCA_905146925.1
- Location
- LR989869.1:10128794-10129162[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 3e-13 2.5e-10 40.4 0.0 3 36 16 49 14 58 0.90 2 2 0.76 6.4e+02 0.7 0.0 12 23 50 61 48 63 0.83
Sequence Information
- Coding Sequence
- ATGGCGTCTTCGAGTTCAAAAGTAAAACGAAAAGAATGGAACACAGATCACATGACAGAAGCTATACAAATGGTTAGAGAGAAAAAAATGGGTTATTTTAAAGCAGCAAAACACTTTGATGTACCAAGAACCACTTTGTTTCGATTGTGTCAAAAAAATAAGCTATCTACAGAAGAAGCTGCAGCTGAAGAAGAAATACGTTTTGACACAGACAGTGAGCCTGATGCCGTTATAGGACTGGAAGTTCCTGACTCAGAAGATGCAGAGTGTATGTTCTGTAACAGCCTGTTTTCTCAAGATACTCAAGGAGAGGCATGGATCAAATGCCTCATGTGCAGGCTCTGGGCACATGGTGATTTCTGCAAGTAA
- Protein Sequence
- MASSSSKVKRKEWNTDHMTEAIQMVREKKMGYFKAAKHFDVPRTTLFRLCQKNKLSTEEAAAEEEIRFDTDSEPDAVIGLEVPDSEDAECMFCNSLFSQDTQGEAWIKCLMCRLWAHGDFCK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00185240;
- 90% Identity
- iTF_00185240;
- 80% Identity
- -