Basic Information

Insect: Aulacorthum solani
Gene Symbol: -
Assembly: GCA_008528875.1
Location: PVMI01035083.1:7314-11529[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 1.9e-05 0.0037 18.6 0.5 1 23 188 210 188 210 0.98

2 9 0.0064 1.3 10.7 6.1 1 23 221 243 221 243 0.97

3 9 2.1e-05 0.0041 18.5 1.3 2 23 336 358 336 358 0.95

4 9 0.00053 0.1 14.1 4.3 2 23 470 491 469 491 0.97

5 9 3.6e-05 0.0072 17.7 2.5 1 23 497 519 497 519 0.96

6 9 2e-06 0.00039 21.7 0.1 1 23 525 548 525 548 0.96

7 9 3.2e-07 6.3e-05 24.2 0.8 1 23 554 576 554 576 0.99

8 9 3.1e-06 0.00062 21.1 2.2 1 23 582 604 582 604 0.98

9 9 2.3e-06 0.00046 21.5 0.6 1 23 610 632 610 632 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	1.9e-05	0.0037	18.6	0.5	1	23	188	210	188	210	0.98
2	9	0.0064	1.3	10.7	6.1	1	23	221	243	221	243	0.97
3	9	2.1e-05	0.0041	18.5	1.3	2	23	336	358	336	358	0.95
4	9	0.00053	0.1	14.1	4.3	2	23	470	491	469	491	0.97
5	9	3.6e-05	0.0072	17.7	2.5	1	23	497	519	497	519	0.96
6	9	2e-06	0.00039	21.7	0.1	1	23	525	548	525	548	0.96
7	9	3.2e-07	6.3e-05	24.2	0.8	1	23	554	576	554	576	0.99
8	9	3.1e-06	0.00062	21.1	2.2	1	23	582	604	582	604	0.98
9	9	2.3e-06	0.00046	21.5	0.6	1	23	610	632	610	632	0.97

Sequence Information

Coding Sequence: ATGGATAATGATATATTGGATGAAAGATCGAGAGAGTTTTTAGAAACTGCAGATCAGTATATCACTGAACATGGTCATCAACATGTATCTGAAGAAAATAGTAAACAACTTGTTAGTAACCAACATAATTTGCCCGAAGAATACCGTATTGatgaGAATGGAGAATTGTCTCATCATACTGGGTATTATGatacaaatgatattttatctgGTGATGGATCTACAACACTTACTGAAGATGACCACCGATTAGCCAGTCAACTAGCTGCTGAGCTTGCCGAAGACAACAAAGCTCTTGCTAATGGTGGCCATCATGACACTCATCTTATGACCAGCTATCTATATAGTActgattttgatttaaatacaaatagtaaaCATTCATCACAAACTCCAAGTCATATCAATAATCAACAAATTATTAGTtctgaaaatttaatagaagATGAAGCTTCGGAATCTGATTACCATgctgaaatacaaaataatttaccacaCAAAAAACGTTTTCGCAAAAGAGAATCCACCCCAGCTTCAATGAGAAGTATTCATTCAAAGTGTTACAAATGTAAACAATGCGGTGAACAGTTTAATTCTCAATCCGCAGTTAccGCACATAAATCAGTACATGCTCCTAAGAAAGTTAGTGGTCGAATGCCATTTTCATGCGAGATCTGTGATACACATTTTACTCatcaaataaagttttttgaaCATCTAAAATTTCATTATGAACCACAGCAAAGTAAAGTAATTGTAGTTACCACAGACTCTGGTACTTCACCACATCatgtaaattatcaaaatcacAATGTTCAAGAACCAACAGATACTaatgaaaatcaatatattgaaGAAAACATTGAAGACCAACCAGAACTTCATGATCTTCCTCCTCTTCAGAGTTATAGAttaacaGAAGAGGAGAGCATGGAGGATAATAAACATTGCATATTTTCATCTGATGGGTCTATATTGGCTGCACAACTTCAGCAGCCATTTCCTTCATGTCATCTCTGTGGTAGAAATTTTCGACGTTTAAAAACATTGGAAATTCATATGGCTTCTGTACACCCACAACCTGCAACTGTTGTAACTGTTAAACAGGACTGTTTGGAAGAGTTTTCTGATCCAGAAGATCTAATGGAAGGTATTCGTCATATGGTGCCTGGAGTAGCTGATACCGAATCAGAAACTGATGAAAAACATCCAATACAAGAgcaaatttgggAGTACAATGGTGAAAGTGTTACAAACCATGAAGATCCTTTGATTAAACCAAAAgaagaaaattgtttattaaatgaaaatgatgaTAATGTGGAAAGCAGTCGAGCAGAACACACTTGGGAAGATGATACAGATGAATTggaacaaataatgaaaaaaaatatatcaaaaaatctTGTATGCACTCAATGTAAAAGGAAGTTCAATCATCGTAATTCTCTACTATATCATTTAAGATCGCATTCCGGTAAACGACCACATAGCTGTAAACTATGTCCCAAAAGTTTCTTTTCCAGCAGTGCTCTTAAGgTACATAATCGGCTGCATACTGGAGATAAACCATTTGAATGTGAGTGGTGTGGACGAAATTTTCGACAGTGGGGCGACCTTAAGTATCATATTGCTTCATTGCACTCTGAATCCAAACAATTTCAATGTGAATTTTGTGGTAAAGACTTTGCTCGTAAATACTCTTTAATTGTCCATCGTCGAATCCATACAGGAGAAAAGAATTATGTTTgtgaattttgtaaaaaaacctTTCGAGCTTCATCTTATTTGCAAAATCATCGTCGTATTCACACAggtgaAAAACCATATAAATGTGAGACTTGTGGTAAAGCATTCAGAGTACGTTCAGACATGCGTCGACATACTGTAGTACATAGGAAAGATGTTGTAAACTCTGttcaaattaatagttatgctGGTCAAGTGAGTGGGATTGCCACATCTTCAGACATGAGTATTCATCTAACTAAATTGGAAGtgaataaagataaaataacagCAGAATCTGATGAAGATGTTAAATTCCATGACAATTTCTCTCATGATTCCAATCAGATATTAACTGCAGGTGAAGTTAGTGCACCTCTTAATCTCAATTTACGAGCTCAAGATAATGATCACAATGGTGATTCAACTAATTATGAACAGTTTAATGGCCGTCAAGAAATAATTGATCGGGAAACAAATACTTTATATGTTTGGCTTCCGCCCAATTctgaacaattattacaaagtGAATGA
Protein Sequence: MDNDILDERSREFLETADQYITEHGHQHVSEENSKQLVSNQHNLPEEYRIDENGELSHHTGYYDTNDILSGDGSTTLTEDDHRLASQLAAELAEDNKALANGGHHDTHLMTSYLYSTDFDLNTNSKHSSQTPSHINNQQIISSENLIEDEASESDYHAEIQNNLPHKKRFRKRESTPASMRSIHSKCYKCKQCGEQFNSQSAVTAHKSVHAPKKVSGRMPFSCEICDTHFTHQIKFFEHLKFHYEPQQSKVIVVTTDSGTSPHHVNYQNHNVQEPTDTNENQYIEENIEDQPELHDLPPLQSYRLTEEESMEDNKHCIFSSDGSILAAQLQQPFPSCHLCGRNFRRLKTLEIHMASVHPQPATVVTVKQDCLEEFSDPEDLMEGIRHMVPGVADTESETDEKHPIQEQIWEYNGESVTNHEDPLIKPKEENCLLNENDDNVESSRAEHTWEDDTDELEQIMKKNISKNLVCTQCKRKFNHRNSLLYHLRSHSGKRPHSCKLCPKSFFSSSALKVHNRLHTGDKPFECEWCGRNFRQWGDLKYHIASLHSESKQFQCEFCGKDFARKYSLIVHRRIHTGEKNYVCEFCKKTFRASSYLQNHRRIHTGEKPYKCETCGKAFRVRSDMRRHTVVHRKDVVNSVQINSYAGQVSGIATSSDMSIHLTKLEVNKDKITAESDEDVKFHDNFSHDSNQILTAGEVSAPLNLNLRAQDNDHNGDSTNYEQFNGRQEIIDRETNTLYVWLPPNSEQLLQSE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00019610;
90% Identity: iTF_00463545;
80% Identity: -