Basic Information

Insect: Aulacorthum solani
Gene Symbol: -
Assembly: GCA_008528875.1
Location: PVMI01055081.1:3670-14682[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 2.2e-08 4.3e-06 27.9 1.7 1 23 278 300 278 300 0.98

2 8 5.4e-05 0.011 17.2 1.8 1 23 306 328 306 328 0.97

3 8 2.8e-06 0.00055 21.2 0.2 2 23 337 358 337 358 0.97

4 8 4e-06 0.00078 20.7 0.8 1 23 364 386 364 386 0.98

5 8 1e-06 0.0002 22.6 8.1 1 23 392 414 392 414 0.97

6 8 1.3e-06 0.00025 22.3 1.1 1 23 420 442 420 442 0.98

7 8 2.5e-05 0.0048 18.3 4.9 1 23 448 470 448 470 0.97

8 8 1.8e-06 0.00035 21.8 1.0 1 22 476 497 476 497 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	2.2e-08	4.3e-06	27.9	1.7	1	23	278	300	278	300	0.98
2	8	5.4e-05	0.011	17.2	1.8	1	23	306	328	306	328	0.97
3	8	2.8e-06	0.00055	21.2	0.2	2	23	337	358	337	358	0.97
4	8	4e-06	0.00078	20.7	0.8	1	23	364	386	364	386	0.98
5	8	1e-06	0.0002	22.6	8.1	1	23	392	414	392	414	0.97
6	8	1.3e-06	0.00025	22.3	1.1	1	23	420	442	420	442	0.98
7	8	2.5e-05	0.0048	18.3	4.9	1	23	448	470	448	470	0.97
8	8	1.8e-06	0.00035	21.8	1.0	1	22	476	497	476	497	0.95

Sequence Information

Coding Sequence: aTGGGAGACGCCAAGTATGATAATCATGAAAACAGACTGATGTTCAGTTTACAACAAATGATGAACTCTGAACATTTCGCAGACGTTGTTATATGCTGCGCTGACGGATACAAATTAAGAGCCCACAAAGTCGTACTAGCGTACTGCAGTTCTTATTTACAAACGCTGTTTCTCAGCCATCCTGGACCGGACGACAGCGTCACGATCATCCTGCAGGACGTCGGACACGAGGATGTGAGTCGCGTCCTGGAGTTCGTGTACACAGGCGCGGCCGTCGTCCCAGGACACAAGATGGACGGTTTCGTGACGGCCGCAGGTACCCTGGGAATAGGGCCACTGCTGGACCCGCGACGGCACTTGGAGATGTCAACGGTCCAGCCACAAGCTCCTCGCCACCCTTGCTCTCCGCAAACAGTCACGTATGACCCTACACCCCTGACGACGCCaccgcagcagcagcagcccCCTTATTGTAGGGTCCGTCAGCCACCCAGAACCACGGGCATCTTGACGCCGTCGCCGTGGGCCCAGAATTCACGGCCACCTTGTGCCACTCCCAGATACTCGGCTCCGAAGACCGTGCAATCTGACCCTCTGGTGATACCGGTGCACCCGCCGACCAGAACCGCAGTTCAGGTTACGGAAATCCAAAAAGCACCTCTTCCTATTCCACTGCCACCAACGCCGCCGGAAGAGCCGACAATTGTTTCAATACCACTGTCGCCGTCAACTGATAGTGACAGGGACACGAACCAAAAACTAAAAGTTACGAGTGATGCTAACAATAATGGGATCCCAGAGAAAGACCGAAATGCGAATCAAACAAAAAGTCACGTTTGTCAAGAATGTGGGAAAACTTTCGTGACCAAAGCATCTCTTAAGATCCACCAGAGGACCCACACGGGAGAGAAACCATTCGTGTGCGAGTCTTGCGGCAAGCAGTTCAGCCAACTGCGCAACTACAAGTATCACAGGTCCGTTCACGAGGGCACCAGAGAGTTCTCCGGCAGCTGTCCGGAGTGCGGTAAGCTGTTCAACGACCGCGGGTACCTGAGCTCACACATGAAGATCCACCGGAACCGGAAGGAGTACGAGTGCGAGTATTGCACGAAGAGCTTTAACCAGCGGGTGGCGTACAACATGCACGTGCGCATACACACGGGCGAGAAGCCGCACAGTTGCCACCACTGCGGCAAGTCGTTCACCAGGAAAATGCTGCTCAAGCAGCACCTGCGCATACACACCGGCGAAAAGCCGTTCTCGTGCGCCGTGTGCCACAAGCCGTTCGCCGACCGGTCCAACATGACGCTGCACATGCGCCTGCACTCGGGCGTCAAGCCGTACGCTTGCGCGGTGTGCGCCAAGTCGTTCACCAAGAAGCACCACTTGAAGACGCACATGAACTACCACACGGGCGTCAAGCCGTACTCGTGCGACAAGTGCGGGCTGAGCTTCAGCCAGAGTAGCAACATGAGGACGCACCTGAAAAAGTGCAGCGCGGTCGCGACGCCACCACCTCCGTCGCAGTCGCCACTGAACGCCACAGTGGCGGCACTGGCCGCACACCACGACTGA
Protein Sequence: MGDAKYDNHENRLMFSLQQMMNSEHFADVVICCADGYKLRAHKVVLAYCSSYLQTLFLSHPGPDDSVTIILQDVGHEDVSRVLEFVYTGAAVVPGHKMDGFVTAAGTLGIGPLLDPRRHLEMSTVQPQAPRHPCSPQTVTYDPTPLTTPPQQQQPPYCRVRQPPRTTGILTPSPWAQNSRPPCATPRYSAPKTVQSDPLVIPVHPPTRTAVQVTEIQKAPLPIPLPPTPPEEPTIVSIPLSPSTDSDRDTNQKLKVTSDANNNGIPEKDRNANQTKSHVCQECGKTFVTKASLKIHQRTHTGEKPFVCESCGKQFSQLRNYKYHRSVHEGTREFSGSCPECGKLFNDRGYLSSHMKIHRNRKEYECEYCTKSFNQRVAYNMHVRIHTGEKPHSCHHCGKSFTRKMLLKQHLRIHTGEKPFSCAVCHKPFADRSNMTLHMRLHSGVKPYACAVCAKSFTKKHHLKTHMNYHTGVKPYSCDKCGLSFSQSSNMRTHLKKCSAVATPPPPSQSPLNATVAALAAHHD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01038668;
90% Identity: iTF_01032362;
80% Identity: iTF_00184741;