Basic Information

Insect: Aulacorthum solani
Gene Symbol: su(Hw)
Assembly: GCA_008528875.1
Location: PVMI01028995.1:699-3599[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 4.1e-05 0.008 17.6 1.3 1 23 92 114 92 114 0.95

2 12 0.00015 0.029 15.8 0.6 1 23 152 175 152 175 0.97

3 12 0.0035 0.69 11.5 2.3 2 23 182 203 181 203 0.95

4 12 2e-05 0.004 18.5 1.5 1 19 210 228 210 231 0.95

5 12 2.2e-08 4.3e-06 27.9 0.3 1 23 242 264 242 264 0.97

6 12 6.4e-06 0.0013 20.1 0.4 1 23 274 296 274 296 0.98

7 12 0.022 4.3 9.0 0.3 5 23 302 320 301 320 0.94

8 12 5.2e-05 0.01 17.2 3.6 1 23 326 348 326 348 0.95

9 12 4.8e-07 9.3e-05 23.6 1.6 1 23 354 377 354 377 0.97

10 12 0.017 3.4 9.3 0.8 1 23 383 405 383 405 0.97

11 12 1.8e-06 0.00035 21.8 0.7 1 23 411 433 411 433 0.96

12 12 9.1e-07 0.00018 22.8 1.3 3 23 441 462 440 462 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	4.1e-05	0.008	17.6	1.3	1	23	92	114	92	114	0.95
2	12	0.00015	0.029	15.8	0.6	1	23	152	175	152	175	0.97
3	12	0.0035	0.69	11.5	2.3	2	23	182	203	181	203	0.95
4	12	2e-05	0.004	18.5	1.5	1	19	210	228	210	231	0.95
5	12	2.2e-08	4.3e-06	27.9	0.3	1	23	242	264	242	264	0.97
6	12	6.4e-06	0.0013	20.1	0.4	1	23	274	296	274	296	0.98
7	12	0.022	4.3	9.0	0.3	5	23	302	320	301	320	0.94
8	12	5.2e-05	0.01	17.2	3.6	1	23	326	348	326	348	0.95
9	12	4.8e-07	9.3e-05	23.6	1.6	1	23	354	377	354	377	0.97
10	12	0.017	3.4	9.3	0.8	1	23	383	405	383	405	0.97
11	12	1.8e-06	0.00035	21.8	0.7	1	23	411	433	411	433	0.96
12	12	9.1e-07	0.00018	22.8	1.3	3	23	441	462	440	462	0.97

Sequence Information

Coding Sequence: ATGGAATCAACACCAAGAAAACGTGGTCGACCGCGTGTAGTTAAAATGGAGAAACGTAGTCCAGAGCCTGAAGATTTAGAAGCGATATTACAAGATATAGATGATGAAGCTATTGATGATTATGACTACGTACCAAATGGTGTGGACTATGaagttatcaaaaataaaaaaaatatcaacaataatgaAGATGTGTACGACTTTGATGTAGAAAAAGAAGATGGGCCTGGCAtaattaAAGCAGAAATAATTCCTGAACCCGATTTGCTGGAACATGCTTGTGATATATGTCCAAGAACATTTAAAACCCTCCCTGGTTTAAAAAGACATAAAACATCACATGATCGGAAACCTCAAGAAACTACTgtttcaaatgacgattccataaaaaaagaaattaataactgtGACTGTTGTGGTGAAGATTTAGCTACTGCTCATACGATTGGTGATTTTGAATGTTATGATTGTGGaaactttttcaaattaaaagttaatatggAGCGCCATCAGTTAATGGTACATTGTCGTGATGACATATTAAACTGCCCCACTTGTGAATTTAGTTGTAAAGATAAAGAAACGTTATCTCAACATTTGTATTCTCATgcagGAACTTTAAAACCTTATTCGTGTCCTGTTTGCTTTACATCATTCAGTAGGAAATATCATCTTGTGCGTCATAATATGCAGACTGGTTGCGATGGTTCTGAAAAACCCAAATTTCCATgtcaaGTTTGTGGAAAAGTTTTTAACCGAAAAGATAATCTAAGAGAACATTTACGAGCTCATGCTGGTCAAACTAAAAAGAAACGTACTTATAATTGTGAATATTGCAACAAAGAATTTGTAGGCTCTGCATTATTAACAGTTCATAGAAGAAGCCATttagGATTGCAATTAAAGtgtTTTGCTAAATTTGCGGCAAAAGAAACTTTAAATCGTCATATCAAAACACATACTGCTTTGAAACCACATTCATGTGAATTCTGTGGCAAGACCTTTATACAAATTTCACAATTGCGTGCCCATTTATTCCATCACACAggtgaaaatggttttacatgTGATATTTGTGGCAAATCTTTTAATCGTCGTTCGAGATTAACACTCCATACTAGATATGTACACGAAGGAGCTGAACCATTTATGTGTACTGTATGCAACAAAGCATTACTGCGAAAAGAAGATGTACAGAGACATCATATTGTTCATTCTGGTGTTAAAGCTCATGCATGTCCTATTTGTGAAAAACGGTTTGCAATGAAGTcttcattaaaaattcacCTATTAACACATACAAAAGAGCCTCCACGAGCATGTGATGAATGTGGTCGTGCATTTATCCGTCAAGATTGCTTATTACGTCATATGCGTTCCAAGCATAGAGATATGTTAGCTGAAATAATGGCTGATgctgaaaagaaaaaactagAAGCTCAGCTTCTGGGGGTAGTAAAGAAAGATAAAAATGACCAAAATGATTCTGATGAAATTGACAATGATAGAGAGGATGACGATGAAAGTATTGATGAATTAGAAGATAATGGGTCAACCACAAGTGAAGAATCCAATCAAAACAATACTTTGGCAGAATCACTAATGGAATTGCTAACCGTATTAGTAGATGAAAGTACTCTTAAAGAGTTTGGCTGGCCAGGAACAACAGTTGATCATTTAATTGAATCCGTAATAAAgagATGTGGTCACACTCCTGTAGCCACTGAAGATGCTTCATACATGACTAGACTTAGggataattcaaaacaattattttccattatcaTTGATGATTCAGCTATTCAAACGCTACTTAGCAACCAAACAATTGAAGAAGTTATTGAACATGTGTTAAAATTGGCTAAGGCTTAA
Protein Sequence: MESTPRKRGRPRVVKMEKRSPEPEDLEAILQDIDDEAIDDYDYVPNGVDYEVIKNKKNINNNEDVYDFDVEKEDGPGIIKAEIIPEPDLLEHACDICPRTFKTLPGLKRHKTSHDRKPQETTVSNDDSIKKEINNCDCCGEDLATAHTIGDFECYDCGNFFKLKVNMERHQLMVHCRDDILNCPTCEFSCKDKETLSQHLYSHAGTLKPYSCPVCFTSFSRKYHLVRHNMQTGCDGSEKPKFPCQVCGKVFNRKDNLREHLRAHAGQTKKKRTYNCEYCNKEFVGSALLTVHRRSHLGLQLKCFAKFAAKETLNRHIKTHTALKPHSCEFCGKTFIQISQLRAHLFHHTGENGFTCDICGKSFNRRSRLTLHTRYVHEGAEPFMCTVCNKALLRKEDVQRHHIVHSGVKAHACPICEKRFAMKSSLKIHLLTHTKEPPRACDECGRAFIRQDCLLRHMRSKHRDMLAEIMADAEKKKLEAQLLGVVKKDKNDQNDSDEIDNDREDDDESIDELEDNGSTTSEESNQNNTLAESLMELLTVLVDESTLKEFGWPGTTVDHLIESVIKRCGHTPVATEDASYMTRLRDNSKQLFSIIIDDSAIQTLLSNQTIEEVIEHVLKLAKA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01167898;
90% Identity: iTF_01167898;
80% Identity: -