Aaur012761.1
Basic Information
- Insect
- Augochlorella aurata
- Gene Symbol
- -
- Assembly
- GCA_028455555.1
- Location
- CM052151.1:2484765-2498761[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.74 60 4.3 0.9 2 23 50 70 49 70 0.93 2 14 0.00039 0.032 14.6 1.4 1 23 276 298 276 298 0.98 3 14 0.014 1.1 9.7 1.5 1 23 337 360 337 360 0.95 4 14 0.0098 0.8 10.2 3.0 1 23 399 422 399 422 0.97 5 14 0.11 8.6 7.0 5.1 2 23 497 518 497 518 0.97 6 14 0.0027 0.22 12.0 3.9 1 23 527 550 527 550 0.97 7 14 0.0017 0.14 12.6 0.4 1 23 687 710 687 710 0.94 8 14 0.019 1.5 9.3 1.5 1 23 716 739 716 739 0.93 9 14 0.012 0.98 9.9 3.0 1 23 754 777 754 777 0.96 10 14 0.45 36 5.0 3.9 1 23 798 821 798 821 0.96 11 14 6.2e-05 0.005 17.1 0.4 1 22 827 848 827 848 0.95 12 14 0.19 15 6.2 5.0 2 23 867 888 866 888 0.96 13 14 3.1 2.5e+02 2.3 2.0 2 23 914 936 913 936 0.90 14 14 0.0039 0.32 11.5 3.3 1 23 950 973 950 973 0.92
Sequence Information
- Coding Sequence
- ATGCGACGAGTTCTAGTCAGGACGGCGCCGTCTTTGTCAACAGCGTTATCAAGACGGTCGAAAACCGCTGCTAAGAAATCGGAGAGGACGAAGCTGAAGCTAAAAGAGAACAAGAGATTCGAAGAGACGTTGGAGCTCGAGAAAATCTACTGCGATGTCTGCAAAACTACCGTCTTTGAACGAAATTATAAGAAACACGTGTTGCGACACAGTTTCAAAGACTATCAGAAATCAGCGCAAGACTTAACTCGGAGGAATAAACGCATCCTTGACGACCGAGTTAACGAACTAAAAGCTCCACGTAAGATTACAAATATCCGGCAAAGGAGGATCGCATTCCGAGCTTCGAAAAGCCGTAAACGCGATAGTAGCAAACGTGCAGCAGAGTCTAACGAGAAGGAAGCCGAGGATCGTCCAAATCCTCGAGACGAGGTTCCGATTTTCAAAGAAAAAGTCCCCGTCAGTCGCAAGCTGAAGAGCAATAACTTGGACAATCCGCAGAGCAGCGAAAGCCCCGAGCAACAAAAAGATCTTTACAAGAAGCTCCACGACGGCTCCTacacctgcgacatatgccaaacggtAGAACGGGGCCAGGACGCAAGCACGGACAGTTTCGGTCGGTTCATCGCTGCGAATGGCTCGGCTGCGGTGCAACGGCTCGACGAATCCACCGGCCAGCCTTGTTATTCGTTAACGTCCACGTCGCAAAGTGCAATTAAATCCGAAGAAATATATTTGTCGCATGTGAAACTCGAGGGGAGCGAAGACAGGCACGGCAATCACCGGGACTTCGGCTCGGAGAGGAACCATTGCGCCGACTTTTACACCTGCAATAAATGTCAGATGAAGTTCCCGATAGAGAGTATGCTGAATCGTCACAAAATGTCGCATAACCTGAACTCCTGGCTCCGTAAAAAAGGTCTAAGCGACAAGCCGGCTCCTCGACCGAGATTAAAGAGAGCAGAGAAGCGAGCGGAGCCGACGAAACCGTCGGAGGAACAGAAGCACGCGTGCGGCTTCTGCGACTTTGCGTGCGGCAGGAGATCGGCGTTGGTCGTGCACGTTCGGAAAACGCATAAATCCCTGTCGCCTAAGGAGGACACTGCTAGCAATCCCTGTGGGTTCGACGGCAACAGCCAGCCGAATTTAAGGAAACGTGCGACGCCGCGCCGGAACCCGGAAACCGTGAGCTTCAAGTGCGACTCGTGCAACTTTGCGTGCAAGACGAGCAGGACTTTAGCTTCGCACGTGATGCGGAGTCATCGGAAAGCCGAGCCTAGCGACTCGAAGAGGTCTAGGAAAACGAAATGCGGCGAGGAGTCGTTTGAGACAGAGGCCGTGCAAGGAGTGTGTCTGGACAGCTGTAAAGAGGACGTTCAGAAATCGAGCGTGGTTCCCTGTGCACCCATGGAGGTCCTGTGTAAGGAGGAGCCCAGGGTGGCGGTTCGCGGGGCGAAGAAGCAGGGCAAGAAGCCCACCGAGGAGCAGTGCAACCTCTGCGACTTCAAGTGCGCGAAGAAAAGCACGCTGTACTACCACAAGCGGCAGCACAAGGCGGAGGACCTCAACGAGATATTCTCCTGCAACGAGTGCAGCTTCAAGACCACCAAGAAGTCCTCCTTGTACTCCCACATCAAACGGAAGCACCGCGTGACGAAGCCCTGCACGCCAGACGGGCTGCCGGAGTTGTTTTGCTgcaaccagtgcgactacaagaacaagaacaaGAGTCTAAACGAGGACGGCCGATTTATATACGGCAAGGAATCGATACCGATGCAGCCGTGGCAAATCGTAGACGTCGAAGGTTGCCTCTACTATGCCTTCCTTCCAGCGAGCCAGCCGCTGAAATTCCCGGAACAGGAGAAGCTGGTCGCGAGATCGCCGACGGGCGCGTCGAAGATGAACGCCGACGAGTCGGAGGATCCGTTCCTGATCCCGGCGGCGGAGGAGGATTTGTCGCGGTACGCGGAGGAGCTCGGCAAGGTGAAGATCAAGACCGAGGACGCGGAGGAGTCCGCGAACGAGGAGCAGCACAGCGAGGACAGCAAGGTGTACGCCTGCGAGGAGTGCAACATCTGCTTCCCCGTGGTGCAGATGCTGAAGCGGCACCGGAACGCGGTCCACGACCAGGCCCAGCGGTACAAGTGCAAGGTCTGCTTCAAGATCTGCCGCAGCCTGGTGGCGTTCAAGATGCACGTGGCGCTGGAGCACAAGGCGGAGGAGCAGGAGCTGAAGGACGAGTGCAGCCTGACCTACGCCTGCGATTTCTGCAGCTACGAGAGCACGAACAAGTCGACCCTCCACTCGCACATCAGCAGGAAGCACTCGAGCAAGCGGATCGGCAGGAGGAAGAACAGCTTCCGGTACGCAGCGGAGCCGGAGGAGTACTCCTgcgacgtctgcgagttcaaatgccagaaccggcgcaggctgaaggagcacctggagcggaagcatgcgtccgagtacaagtacgactgcgagtactgcggcaagaagttcaaggtcaagggcgacatgaggctgcacgtcagGCGAGGAGCAGCATTCGCGAAGGAACACGAGAAATTTGAAGAGGAATCTGCGGAGCTCAGGTGCGACGTTTGCAGCAAGCAATTCAAAAAGAGATGCATCCTAAGACGACACAAGTCGATGCACGAAGCTCGGAAGGAGAAGCTGCTGTCCAGAGAGCCTCCGGCCATGGAGTTAGTCTGCCAAGAGCAGGAGGCTCTGTCTTGCCAGACTTGCGAGTTCCGGTGCACCAAGAGGTCCGCCATGCTCGGGCACCTGGCTCAGAAGCACGGCGGCTCGGGGAAGAGCAAGTTcaccagcaaacgcaagttctcctgcacgatctgcgggctggcctgctcgcgcaaggagaccttcagatctcacttcgtgcgcaagcatactcaacgGTTTGTTTTTGCTATTGGACAAGAATAA
- Protein Sequence
- MRRVLVRTAPSLSTALSRRSKTAAKKSERTKLKLKENKRFEETLELEKIYCDVCKTTVFERNYKKHVLRHSFKDYQKSAQDLTRRNKRILDDRVNELKAPRKITNIRQRRIAFRASKSRKRDSSKRAAESNEKEAEDRPNPRDEVPIFKEKVPVSRKLKSNNLDNPQSSESPEQQKDLYKKLHDGSYTCDICQTVERGQDASTDSFGRFIAANGSAAVQRLDESTGQPCYSLTSTSQSAIKSEEIYLSHVKLEGSEDRHGNHRDFGSERNHCADFYTCNKCQMKFPIESMLNRHKMSHNLNSWLRKKGLSDKPAPRPRLKRAEKRAEPTKPSEEQKHACGFCDFACGRRSALVVHVRKTHKSLSPKEDTASNPCGFDGNSQPNLRKRATPRRNPETVSFKCDSCNFACKTSRTLASHVMRSHRKAEPSDSKRSRKTKCGEESFETEAVQGVCLDSCKEDVQKSSVVPCAPMEVLCKEEPRVAVRGAKKQGKKPTEEQCNLCDFKCAKKSTLYYHKRQHKAEDLNEIFSCNECSFKTTKKSSLYSHIKRKHRVTKPCTPDGLPELFCCNQCDYKNKNKSLNEDGRFIYGKESIPMQPWQIVDVEGCLYYAFLPASQPLKFPEQEKLVARSPTGASKMNADESEDPFLIPAAEEDLSRYAEELGKVKIKTEDAEESANEEQHSEDSKVYACEECNICFPVVQMLKRHRNAVHDQAQRYKCKVCFKICRSLVAFKMHVALEHKAEEQELKDECSLTYACDFCSYESTNKSTLHSHISRKHSSKRIGRRKNSFRYAAEPEEYSCDVCEFKCQNRRRLKEHLERKHASEYKYDCEYCGKKFKVKGDMRLHVRRGAAFAKEHEKFEEESAELRCDVCSKQFKKRCILRRHKSMHEARKEKLLSREPPAMELVCQEQEALSCQTCEFRCTKRSAMLGHLAQKHGGSGKSKFTSKRKFSCTICGLACSRKETFRSHFVRKHTQRFVFAIGQE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -