Aaur003242.1
Basic Information
- Insect
- Augochlorella aurata
- Gene Symbol
- -
- Assembly
- GCA_028455555.1
- Location
- CM052166.1:2524892-2526730[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 5.2e-05 0.0042 17.4 1.3 1 21 69 89 69 90 0.95 2 14 5.9e-06 0.00048 20.3 0.7 1 23 97 120 97 120 0.97 3 14 3.1 2.5e+02 2.4 2.4 1 23 130 153 130 153 0.91 4 14 0.24 20 5.8 0.1 3 19 177 193 175 195 0.92 5 14 0.0042 0.34 11.4 4.7 1 23 203 226 203 226 0.95 6 14 0.0098 0.8 10.2 0.7 2 23 238 260 237 260 0.93 7 14 3.4e-05 0.0028 17.9 0.2 1 21 291 311 291 312 0.96 8 14 0.0006 0.049 14.0 3.2 1 20 351 370 351 374 0.90 9 14 0.0043 0.35 11.3 0.8 1 20 404 423 404 425 0.94 10 14 0.0014 0.11 12.9 6.4 1 23 432 454 432 454 0.98 11 14 0.0037 0.3 11.5 1.2 1 23 464 487 464 487 0.95 12 14 0.2 16 6.1 0.3 2 20 527 545 526 547 0.91 13 14 3.6e-05 0.003 17.9 2.2 1 23 554 576 554 576 0.97 14 14 1.1 86 3.8 4.0 1 23 585 608 585 608 0.87
Sequence Information
- Coding Sequence
- ATGAGGGAGAAAGAGAAGCAGTCGCAAAACGTGTCTAATCCCGTGAATACATTACCGATGAAACGAACATTAAATGACGCGAACATTAAACTGAATGCGCCACAATCTAAGTTAGGTTTGATCAAGAAGCGTTCTTATGAGGCAGAATCACTGTCAATGAAACAACCGAAGATGTCGAAAGATATCACTTTTTATAAGAATAAATTCAGTTGTACTATTTGCAGTAAGCGCTTCAAAACGTTTCAAAACTTACGTATGCATGAACGGATCTATTCCAAAACCGCCGCGTATGTTTGCAACATCTGCAATACCGCGTTCAGCACACCAACATTACTGCGCTACCATTATCAATCCACCCACACGATCGGCACTATCACAAGGTACAAATACTTCTGTACGTTCTGCGCTCAGGGCTTCCAGAAGAAGGTCAGCGTTGAGAACCACACGGCACACTTCCATGCTGGTCACACACCCATCATTCCCAGACCATGGTTGGACTGCGCCGAAGACTGGGAAGTGAGTACAGCGTGCAGCGTGTGCAATCTGGAGTTTAACTCCAGCGAAAGGTTTATCCAGCACAATATGTTTTACTACAAGGGTCAAATGTTCACCTGCACGTTCTGTAGTAAGACCTTCTACGGAATGTACATGCTACATAGACACATTAAATTCGAGCACAACGTGGAAGACGCGAGGAAACAATACACATCTACGTGCGACATCTGCAACGAAGGTTTCATCCTGGAGTCAGAGCTCCATGCGCATAAATTGCATGTGCATTTGAGATCGTATGTTGAGACTCCGCAGAACCTGCAGGATAAATCCTACGTTAGTGCGGTTTTGAATGCAGAATCGATACCGATTCTGAAATACAACTGCGATATTTGCCATATGATGTTCGTAACTGAAGAAGACCTGCGTCAGCATATGATGGAGTATACTAATGACGGTAATTATCTTTGCCTTTTTTGTACGCGAAAGTGTTTTACAGACGTCGTTCTTAGTAAGCATGTAAGTTTGTCTCATACTTGCTCCAACTTCACCGATTGTTACAAGTGTCACTACTGCGATGAGGTGTTAACCTCGAGCACAGAACTGAAGTCTCACGAAGTACACTTTCACTCAAAGATCAGCGGCTCGCAATATGACAGCAGTGATCAAATAATCGCGAATCAAACTACTGAAGCATCTGAAAACATTGCGAAAGCTTTTAGCTGCACTATTTGTAACATGAAGTTCGAAAGCTTGAAAAAATTGACTTATCATACCACGGAATACTCGACTGTAGGATTGTACAGTTGCCAAATTTGCAACCGTCATTTCCCAAAGCTACATCACCTAGAGGTTCACAAGTTGAGACACACGAATTTGAACTTCATTCTGTGTAAATATCACTGTCCCGTGTGCCGCGAAGGATTCGCAAATCAGATTAATGTTCAGATGCACGTGATGCACTTCCACACACGTACGCCAGTAGAGAGACTGCTAGCTAGAGATGCTCGGAGGATGCAACAGTTCGATCAGAAAGCTCTTAAGCCTAAGCCAGATTCAAATAGTCAACCGAAAAAGGATTTGTTAAAGTGTCCCAACTGTATGAAGACGTTTTTTTCCGCGAGGGCTATGAACTATCACAAAATCCGCTACCTGGACGAAGGGCGCCACGTCTGCGAGCAGTGCGGTAGAAAATTCCGCATGGCGAGGTTGCTGAGAGAACATTTAAAGAAACATGCTCGTGGCTTCGATCGTCTGAAGCACTCGTGTCCTTTTTGCGATGACACATTCAGGAATTCGATGGCTAGACACCAGCATATCGTTCATCTTCATTGCAGCAGCATCTAG
- Protein Sequence
- MREKEKQSQNVSNPVNTLPMKRTLNDANIKLNAPQSKLGLIKKRSYEAESLSMKQPKMSKDITFYKNKFSCTICSKRFKTFQNLRMHERIYSKTAAYVCNICNTAFSTPTLLRYHYQSTHTIGTITRYKYFCTFCAQGFQKKVSVENHTAHFHAGHTPIIPRPWLDCAEDWEVSTACSVCNLEFNSSERFIQHNMFYYKGQMFTCTFCSKTFYGMYMLHRHIKFEHNVEDARKQYTSTCDICNEGFILESELHAHKLHVHLRSYVETPQNLQDKSYVSAVLNAESIPILKYNCDICHMMFVTEEDLRQHMMEYTNDGNYLCLFCTRKCFTDVVLSKHVSLSHTCSNFTDCYKCHYCDEVLTSSTELKSHEVHFHSKISGSQYDSSDQIIANQTTEASENIAKAFSCTICNMKFESLKKLTYHTTEYSTVGLYSCQICNRHFPKLHHLEVHKLRHTNLNFILCKYHCPVCREGFANQINVQMHVMHFHTRTPVERLLARDARRMQQFDQKALKPKPDSNSQPKKDLLKCPNCMKTFFSARAMNYHKIRYLDEGRHVCEQCGRKFRMARLLREHLKKHARGFDRLKHSCPFCDDTFRNSMARHQHIVHLHCSSI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -