Aaur005983.1
Basic Information
- Insect
- Augochlorella aurata
- Gene Symbol
- -
- Assembly
- GCA_028455555.1
- Location
- CM052162.1:1015957-1020329[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 6.6 5.3e+02 1.3 0.2 1 20 363 382 363 386 0.77 2 10 0.0083 0.67 10.4 3.2 1 23 393 415 393 415 0.97 3 10 0.00065 0.053 13.9 4.0 1 20 421 440 421 443 0.96 4 10 1e-06 8.2e-05 22.8 1.5 1 23 449 471 449 471 0.98 5 10 9.5e-05 0.0077 16.6 2.3 1 23 477 499 477 499 0.97 6 10 1.7e-05 0.0014 18.9 0.7 1 23 510 532 510 532 0.98 7 10 2.2e-08 1.8e-06 28.0 0.3 1 23 538 560 538 560 0.99 8 10 6.8e-06 0.00055 20.1 0.6 1 23 566 588 566 588 0.95 9 10 9e-06 0.00073 19.8 0.1 1 23 594 616 594 616 0.93 10 10 4.2e-06 0.00034 20.8 0.2 3 23 624 644 622 644 0.98
Sequence Information
- Coding Sequence
- ATGAGCTGGGAAATCAGCTGTACAGATATGTGTCGTGCTTGCATGAAGGTCGATGGCGTTCTTCTCCCTATGTATGATGACGACACGATCAGTCAAAAAAATTTACCTGATAAACTTGCTGAACTGGCATCGATACAGATCGATAAGTATGATGGGTTACCAAACATGTTGTGTGCAAAATGCGCATATCGCACGGATGCATTTTATGAATTCAAACTGCAAGTTCAAGCCACAGAGAAGAAACTTCGCAAGATGTTTGAGACACAAATACATTGGGCCATAAAGGAAGAGATAATGGGCAATGATGTTGATCAGGACTGTGTAGAACAAGCAAATGAAGTGCTAGAGGTGAAGTCGTTTGACATCAAACAGGATATCAAGTCTATGAACTCGATAGTGAATTCAGAACACTTTCTAGCCGACGAAATAAATATGACTGTTAAAGGAGAACATATGTTAGAAATCGATGTGTCTCAATTAGCGGATGAAAATGACGAATTTCACAAAGCTGACTTGTCCGACTTAAGGAGTATTCTTATCTCGAAACTACCAGGAACACACGTCGAACAAGAAAAACAAATAAAGGGTGAGATACCAAATGAAATTTCAAAAATGCTCGAATCTCAGCATTTAGACTATACAATAATGTACATACCGGAAGATGATGTTTCATTGGGACATATGAACACTGAAAACGTACTTCCTTGCGAAACAGAAAATACTATTAAATTCGAGGATGACAAAAAAATTCTCGAAGGTGACCACGACGAGGAGATCTTGAATGATTCACAAGATAACGAAGACTTTCTCGATACCGTCTACGTTGAAAAATTTGAGGATACGGAAGTTAGTAAAAAAGACCAAGACAAACAGTCTTGGAAGTCTCCGAATCCGGAAAAGAATTCAAGGGAAAAAGTAAACGGACGAAGCAAACGAGAAGTTTCATTAGAATTAAAACCACAGACAGAAGAGAGCGAAGACTCTGATTCTGATTACTTTGTTGACCCAAAGGACAACATACTGGGTAGTTTGAACGATACAATTACTAGAATAAAGGAGATAAAACTCGAAGATAATACGATACAGTACCAATGCACATTGTGTTTACAAAATTATGATAAACTGACTGGTGTTCTATTGCATACTATAGACAATCATGTACCAAGTAGTGGGCCATTCTTTTGCGTAGTATGCGAAAAAGATTGTGAGAGTCATAGAGAGCTGCGAGCACACGTGAAAACACACACTGGTCAGTTTCCGTACTCATGTTTCATATGCAACAAAGCTTATACAATGAAGAGGTACCTGAAGAGGCATATGGTGTGCCATACAGATTTTCCTAGACATCGGTGTCCGAAGTGTGGTCTCAGATTCAAAGTTAAATCCGAGTTAGAATCGCACATTTCAACGCATATACGTGGCGCACCTTACGCTTGTAGCCAATGTCCGCGATTATTTAACCACAAGGGCAATTACAAACGACATTTGATCAGTCATTTGGACCCGCAAGGTCTTCACCTGCCTAAATATCCGTGTAAAGTTTGTGGGAAAAGATTCCTGAATAATCGTACTTTGGACACGCATATGCGTGTTCATACTGGCGAGAAGCCGTTCAAATGTGATGTTTGTGGGAGATCGTTTTCGCAGCAAGGCAACTTATTGAATCACGTAAGAATTCACTCGAATCCGCGAAGTTATACGTGCGAGGTCTGTGGGAAACGATTTAATCAAAGGGCTACGTTAAGGGATCATAGCCTTCTCCATACAGGAGAAAAACCGTACGTTTGTAACGTCTGTGGAATTGCGTTTACCTTTAGCGCAGCATTGAGACGTCATATGTGGACTCACACTGGTGGAAAACCATTTGGATGTGAAATTTGTGACGCTCGTTTTGTGGGTAAATACGATTTAAGACGTCACATGAGGATACACACTGATAGACCTAGAACGAAACGGAGGAAGAATACGATTAGAGTGAATGATGATGAAGACAAGGGCAATGAAGAGAACATTGCCATGTCCGAGCATCCTGACACAGAGACAGTCTTAATCGAACAGGTTTTCCTGACACAGGATGTTACACAAGTTGTACGACAACAAGAATCCGAGAAAGAAAACGTCGATGCTCTTTTTAACCTTATACAATACGGTTAA
- Protein Sequence
- MSWEISCTDMCRACMKVDGVLLPMYDDDTISQKNLPDKLAELASIQIDKYDGLPNMLCAKCAYRTDAFYEFKLQVQATEKKLRKMFETQIHWAIKEEIMGNDVDQDCVEQANEVLEVKSFDIKQDIKSMNSIVNSEHFLADEINMTVKGEHMLEIDVSQLADENDEFHKADLSDLRSILISKLPGTHVEQEKQIKGEIPNEISKMLESQHLDYTIMYIPEDDVSLGHMNTENVLPCETENTIKFEDDKKILEGDHDEEILNDSQDNEDFLDTVYVEKFEDTEVSKKDQDKQSWKSPNPEKNSREKVNGRSKREVSLELKPQTEESEDSDSDYFVDPKDNILGSLNDTITRIKEIKLEDNTIQYQCTLCLQNYDKLTGVLLHTIDNHVPSSGPFFCVVCEKDCESHRELRAHVKTHTGQFPYSCFICNKAYTMKRYLKRHMVCHTDFPRHRCPKCGLRFKVKSELESHISTHIRGAPYACSQCPRLFNHKGNYKRHLISHLDPQGLHLPKYPCKVCGKRFLNNRTLDTHMRVHTGEKPFKCDVCGRSFSQQGNLLNHVRIHSNPRSYTCEVCGKRFNQRATLRDHSLLHTGEKPYVCNVCGIAFTFSAALRRHMWTHTGGKPFGCEICDARFVGKYDLRRHMRIHTDRPRTKRRKNTIRVNDDEDKGNEENIAMSEHPDTETVLIEQVFLTQDVTQVVRQQESEKENVDALFNLIQYG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00864128;
- 90% Identity
- iTF_00183434;
- 80% Identity
- -