Aaur012769.1
Basic Information
- Insect
- Augochlorella aurata
- Gene Symbol
- -
- Assembly
- GCA_028455555.1
- Location
- CM052151.1:2532610-2542743[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 0.038 3.1 8.4 0.1 2 23 47 68 47 68 0.97 2 21 0.00019 0.015 15.6 0.2 2 23 81 102 80 102 0.95 3 21 0.046 3.8 8.1 1.1 1 21 170 190 170 191 0.96 4 21 0.00015 0.012 15.9 3.0 2 23 216 237 215 237 0.94 5 21 0.00022 0.018 15.4 2.2 1 23 241 263 241 263 0.97 6 21 0.00019 0.016 15.6 1.0 3 23 271 291 270 291 0.97 7 21 0.0001 0.0083 16.5 4.2 2 23 298 319 297 319 0.96 8 21 0.074 6 7.5 3.7 1 23 328 350 328 350 0.93 9 21 0.15 12 6.5 0.3 3 23 358 377 357 377 0.95 10 21 1.7e-06 0.00014 22.1 1.3 3 23 385 405 384 405 0.98 11 21 2.3 1.9e+02 2.7 2.2 1 10 411 420 411 423 0.91 12 21 0.0022 0.18 12.3 1.2 1 23 651 673 651 673 0.97 13 21 9.5e-05 0.0077 16.5 3.2 2 23 682 704 681 704 0.93 14 21 0.00026 0.021 15.2 6.6 1 23 710 732 710 732 0.98 15 21 0.042 3.4 8.2 0.4 1 23 736 758 736 758 0.97 16 21 4.8e-06 0.00039 20.6 0.8 3 23 766 786 765 786 0.97 17 21 0.00028 0.023 15.1 0.1 1 23 792 814 792 814 0.98 18 21 0.1 8.4 7.0 0.5 1 23 820 842 820 842 0.97 19 21 4.6e-06 0.00038 20.7 0.0 3 23 850 870 848 870 0.97 20 21 8.2e-07 6.6e-05 23.0 0.6 1 23 876 898 876 898 0.98 21 21 5.2e-07 4.2e-05 23.7 1.8 1 23 904 926 904 926 0.98
Sequence Information
- Coding Sequence
- ATGCTACCTGAGGACCAGGAAGAGTGCGAGGCGAACGAGATCTTCGATCACGAAGAGACAGAACAATTGCTCATTGAAGATCGTTTGCACGTGCCGAAGGTCGAGGCCACCGAAATAATCATCGCCGAGAATATCGCGCAGTGCAGTCTCTGCGGAGACAGTTTCATTTCCGACCAGGCCCTCGAGATGCATCTAGAGATGCACGAGCAAGAGCAGGCTCATCTGTCGGGAGAGCAGCTCGTTTGCGAGCAATGCGGCTGCAGCTTCGACTCGAATGCTGCTCTGGAAGAGCATCAGTTGGAGCACGAGTCCGACGAGACGGTTGCCAatcagagacggcagagcgtcgagtccaagtatcaGTCCGTCAGCGCTACGTCGTCCAGGCCGAATCGACCTCGCGCCGTTAAATCATCACTGGCAAGAGACAGGGTCCTAGTCATCTCTGAAGATGTATCCAGTAAATCCTGCGGGCAGACGATCATTCTTCGCAGGAGCGAAAAGAAATACACGTGCGACGCGTGCTGCGAATCTTTCCCGAGGAAGATGCAGCTGCTGAAGCATCGTCGAGCGCCTTgcaaggagtccggggcgataacagatccggcgagaaccgtaggtagccgaatggaggctggtccgatcgagtgcaacgtctgccacaaggtcttcaagaagaagaagtacttgaacgtccacaaaacgctgcacggggcgccgcacatctgtcacgtgtgcggcgccaagttgacctcggagtattacctgaagatccacatcagaaggcacaataaggagttcaccgagttctgtaaggtttgtaacaaaggcttctacctgaaggcgaccctgcggacccacatgagcgtgcacagcgacgacaagccctgcacctgcgaggtgtgccacaagtcgttcggcaacacggtttacctgaggagccacatgaagattcacagtctaccggagaccaggaagaagtacaagtgcgagatttgcgggttcgagacgttttacagctactgctacaagggacatctctcgacgcacacgggcgagagccaggtggcttgcgaagtctgcggcaagctgatcaggcgacagtacatgaagacgcatattcgaattcacaccggtgagaaaccggagatctgcgagttctgtgggaaggcgttcagctcgaggaagtacctggtcaaacaccgaagaactcacactggagagaggccttataaatgcaaaatctgcgagaaacgGTGCGAGGAGATCATCGAGTACACGAAAATAATCGAACCGATTAGCACGTTCGAGGGTATGGAGTTGATCAAGTATCAAACCGAGGAGGTGTGCGTCGAAGAGTACGAGGTTACTCACCAGGAGATAATCACAGAGACATTAGAATTCATCGAAGAAACGGACTCGAACATGATAGAGGAGGTGGAGTCGAACCTGGTCGAAGAAGCCGAGCCGAATCTCGTCGCAGTAGCCGAGTCGAACCTGACCGAAGAGACCGAGTCGGACCTGATCGAAGAGGCCGAGGCAAACCTGATCGAGGAAGTTGAGGAGGAAAACCTGGTCGAGGAGGTCGAGGAGGAAAACCTGGTCGAAGAGGTTGAGGTCGAAGAGGCCAAGCCACGCTTGAAGGAAGAGCCCACCATGATGACGACCATGATGGACGAGTCCTCTATGTcgaacatggagttgcggatggaatctgaaacggacgaggaaatggaacgagaactggagcgagaactggaagcagagccgaaactggaaccggagtcggacctggagccggaactcgaaccggaactcgaaccagaactggaatccgaactggaaccggaactggagtcggagccagagacagaactgaaaccagagctgcctcgaatgagcaaaccgttcctccgtgatcggaacaTGAGCAACAAGTGTTCGGTAATTTAcgagtgcgacatctgcaagaaaaggatacgcaaaaaggtggcgtttctaagacacaggcaagaccacgagaggaatggcgacgagctctgccactgcgacgagtgcgacaagtcgttcatcgacgacgacaagctcaagaagcacatggtcaaggtccaccagaaggagaaaccgtaccagtgcatgctctgcaccaagtgcttcaagaccaaagagttcttgaagactcacctgaagcagcacaacaagcggttcacctgcgacatctgcgggatatcgaaggtgtccggctacgacctgcggctgcacaagaagaagcacaacgaggagtacgtggcgaactgcgacatgtgtgggaaagggttctacacgaagcaaacgttggagagacacctgctcactcacaccggcgagaagccgttcgtctgcactatctgcaaggccgcttacgcgagctcggcctatctcggcacgcacatgaagtcgcacggcgagcgggagaagtacaagtgcaccctgtgcaacttcgagagctactggaagggcgcgctgaaggtccacctgaagatacacaccggcgagaacctcatcgcctgcgaagtctgcgggaaatcggtctcgagcaaggcgtacctgtcggtccacatgcgcatacactccggcgaaaagccgcacgtctgcgaagtctgtggcaaagctttcagtgtcaggaagtatttgatagtgcacctcagaacgcacacgggggagaggccgtacgagtgccgggtctgtcaaaagagattcacgcagcagggatccttgaattcgcacatgaagtcgcatattccgaggaagtga
- Protein Sequence
- MLPEDQEECEANEIFDHEETEQLLIEDRLHVPKVEATEIIIAENIAQCSLCGDSFISDQALEMHLEMHEQEQAHLSGEQLVCEQCGCSFDSNAALEEHQLEHESDETVANQRRQSVESKYQSVSATSSRPNRPRAVKSSLARDRVLVISEDVSSKSCGQTIILRRSEKKYTCDACCESFPRKMQLLKHRRAPCKESGAITDPARTVGSRMEAGPIECNVCHKVFKKKKYLNVHKTLHGAPHICHVCGAKLTSEYYLKIHIRRHNKEFTEFCKVCNKGFYLKATLRTHMSVHSDDKPCTCEVCHKSFGNTVYLRSHMKIHSLPETRKKYKCEICGFETFYSYCYKGHLSTHTGESQVACEVCGKLIRRQYMKTHIRIHTGEKPEICEFCGKAFSSRKYLVKHRRTHTGERPYKCKICEKRCEEIIEYTKIIEPISTFEGMELIKYQTEEVCVEEYEVTHQEIITETLEFIEETDSNMIEEVESNLVEEAEPNLVAVAESNLTEETESDLIEEAEANLIEEVEEENLVEEVEEENLVEEVEVEEAKPRLKEEPTMMTTMMDESSMSNMELRMESETDEEMERELERELEAEPKLEPESDLEPELEPELEPELESELEPELESEPETELKPELPRMSKPFLRDRNMSNKCSVIYECDICKKRIRKKVAFLRHRQDHERNGDELCHCDECDKSFIDDDKLKKHMVKVHQKEKPYQCMLCTKCFKTKEFLKTHLKQHNKRFTCDICGISKVSGYDLRLHKKKHNEEYVANCDMCGKGFYTKQTLERHLLTHTGEKPFVCTICKAAYASSAYLGTHMKSHGEREKYKCTLCNFESYWKGALKVHLKIHTGENLIACEVCGKSVSSKAYLSVHMRIHSGEKPHVCEVCGKAFSVRKYLIVHLRTHTGERPYECRVCQKRFTQQGSLNSHMKSHIPRK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -