Apur007279.1
Basic Information
- Insect
- Augochlora pura
- Gene Symbol
- -
- Assembly
- GCA_028453695.1
- Location
- CM052106.1:20835928-20843940[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.61 43 4.7 2.2 2 20 135 153 134 155 0.94 2 19 0.0019 0.14 12.5 5.4 1 23 657 679 657 680 0.95 3 19 0.12 8.3 6.9 0.4 5 23 687 706 686 706 0.94 4 19 0.59 41 4.7 1.0 2 23 713 734 712 734 0.95 5 19 0.00028 0.02 15.2 1.2 2 21 761 780 760 781 0.95 6 19 0.00038 0.027 14.8 1.2 1 23 883 906 883 906 0.97 7 19 0.39 27 5.3 0.1 2 19 962 979 961 981 0.93 8 19 0.095 6.7 7.2 2.8 1 23 989 1012 989 1012 0.95 9 19 0.019 1.3 9.4 2.7 1 23 1023 1046 1023 1046 0.91 10 19 0.0066 0.46 10.9 0.0 1 20 1079 1098 1079 1100 0.95 11 19 8.5 6e+02 1.1 4.3 1 23 1107 1130 1107 1130 0.91 12 19 0.22 15 6.1 1.4 1 23 1139 1162 1139 1162 0.91 13 19 0.0046 0.33 11.4 0.2 1 19 1177 1195 1177 1198 0.94 14 19 0.0059 0.41 11.0 6.4 1 23 1207 1229 1207 1229 0.98 15 19 0.011 0.77 10.2 1.0 1 23 1239 1262 1239 1262 0.95 16 19 7.2 5.1e+02 1.3 0.1 2 20 1302 1320 1301 1322 0.90 17 19 0.00024 0.017 15.4 3.2 1 23 1329 1351 1329 1351 0.97 18 19 0.084 5.9 7.4 0.5 1 23 1360 1383 1360 1383 0.81 19 19 3.3 2.3e+02 2.4 3.5 3 21 1484 1502 1483 1505 0.93
Sequence Information
- Coding Sequence
- ATGGCTCGAGTTTATGTATACGATCGCCCAGTTGATTCTGTCCTGACGAATGCGTCCTTCTATGACAAGCTGAATCATGTTACAACTCAGCTGGAGATTAAACAAGAACCACGCGATACGGATGGTAATTACCAGAGCAGTACTTTGCAGCTGGCAGATAACAATGCAAAAGCTGCCGTAATAGGCGAAACAGTTGTTCAGGGGACGCAACGATTGAGTAGTTTAAATAACAAAGAGAATAAGCTTATATCGCCTAAGGACCGTGATGATATAGACATACCTAACACGAACGTTATCAATAAGCGAAAGCGTAAAGCTTCGTCATTTAAAGAATCGAAAAAGCCGGAGAAGAGTGCCCGCGTTAAATATAAGTTTTCAGAACTAATCCAAGAAGCACAGGTGAAATGTCGCATATGTTGCATCAAATTTAAGTCCTTGAAAAAATTACGGAAGCATATAGACAATTACCCGGAAAAGATCGAGCATCCTTGTAATAAATGTCTTTCGTTATGTAAATTACCACATTTGTTAAATAATCAAATTTGGATCCGTAGGCGAAAAAGTATTCGTTCCAAAAGAGTATGCTTTTACTGCTCTTTCTGTAACGCGAGATACTCGAAGAAATCGCATTTACAATGTCACGTGTTTCATAAACACAATGCATTATTACCCTGTTCTGCAAACCAGTCTGATAATCCTAGCGAAATTGATGAATCTATGAAAATGAAAAAACTAGAAGGGATTAATAAAACCAGGAAAAATGGTAAAATTAGTGGAAATACGAGAACCAGAGAAGTTAGTGAAATCGGAGAAACTGGTAAGTCAAATGAAACTAATAAAGCAAGAGAAACTAGTAAAACCAGAGAAAATATGGAAGCAAGAGAAACTAGTAAAACCAGAGAAAATATGGAAGCAAGAGAAACTAGTAAAACCGAAGAAAGTATGAATGTAGGAGAAACTAGTAAAACCACTGAAATTGATGAAAGCAGTGAATTCCCATTAACTGAGGGTGCTGATAGTCACAGAGAAAGTTCTTCTGTACAGCAGAAAGGAGATAATGAAACCAGTCCTTCCACCAAAAAAATGAGACAAACGACTATAACCGAGTTCTGGTCAGGAAACATTAGAATAACAGAAGCTACTTCTCCGCAACAAGTTAATACTCCAAAAAAAACTCTGAAGAAAGCGATAGCTAAACAAAATCAAACACTGATACAGGGAACTGATTTTTATGTCCAAACACCGAAAAGGAGCACACCTATAGAATTGAAGAGGATATCCGAGTCACGTGGTCCTGAAGAGGATATCCACAAAAAAGTTGTAACTAGAAGAAGCGGGATGATAACAGAGAAGGTAGATCTAGGTCTGGAAAGTGGAACGAAGATAACGTCAATTAACAATGAAATCTCTACACCAAAAGACAACACTACGAAGCCTAACCAACCATTTGTCCAAATACACATAGATTCCGACACGATGGAAGGATTACTCAGTAATAATGTAAAAGTAGAAGTGGAAGATGAATCTAGCGAATTCGCATTACAAAATTACAGTCTTCGACGCGTAACAAGAAATGCCATTGACCAAGCTTCAAATGATTTAAATACGACACCCACGAACAAATCTATTAAGAGAATTAGGTCCAGAACACTGTCCCCTCGCATGGTTAGAGAAAAACGTAAGCATAAATGGACGGAGGACGAACTGAGGACCAAATTCAAATGTAAAGGCTGCAAAATTAACTTAGTTAGATGCGATATGGTGGTTGAAACAAAAACTGTCGACGTTATTCAAATCTCGATAAGAGAAGACGAAGAACTCGCAGAAATGTGGAGAAAGAATATGAAGTTAACGAGATCGAACGTTCCACTAACCAAAGTGGACGAACCTATAACAGTAGAATGCTTACAAGAATCAGAAATGTCTAATGCATCTTGTGATAGCACGAAAACCAGCTCACGTATACTGTTTCGGTGTAAAGTTTGCAAGGAACGCTTCCCTTTAAAGAAAAATTTATGCAAGCATTTGGCGCTACACCATGTGTTCTACATATCGAGTATATGCAGCGCTATGTACAAAACTAGAACTGAATTGCAGTCACACTACATGAAGAGACATTGTGGTTTCAAGCGTATTCAGTGCTGCGTGTGCTTTGAGAAGTTTTCGTCACTAGTAATATTGAAGCAGCACCTCATACTGCACTGCATCCAGGTATTGTTACCGAAGAACGACAGGCAACGTAACAAGAAACTGGGCAAGTGTGTGATCTCCGAAAAGATCCAGTGCAAGGTTTGCGGCAAGCGCTTTCGGTTAAAGTCCCGTTTCAAGGAGCACCAAAGACTGTGTAAGAAAATGGGGACAAGAGGCAAGAAATTGCAAAAAGTGCCGAATCCCGTGGAAACATCACTAACGGAACGAACATTGAAAGATTCGAACATTGAACTGGACCATGATCTTCATAATGCAAAATCATCGACAGTGATACAACCGAAGAGGTTGTTGAAGGGTATCGCTGTAGCGAAGGGATACAACGTAGACCTTTCCGACGCTGACAAGGAGAAATTCTTTTGCATCACTTGCAATACTCGCTTTCAAACATTTCAAAAATTATGCATACACGATCAGACCTACTCCAAAGCCGCCACGTACGTTTGCGAGAGCTGCAACACCGCGTTCAGCAATATGAGATTACTGCGGAATCACCGTCGTAACACCCACGCGATAGATACTCTTCGAGAGTTCAAGTACTTCTGCTCGTTTTGCACTCAGGGCTTCATGACAAAGCTCAGTGTTCATATTCACACGAAACACTTCCACGCTGGTCAGACACCTATTATTCCCATACCGTGCGTAGACACCACCCAAGATTGGTTGGTGTGCAAAGTGTGCAGTGTATGTAATCTGGTGTTCGAGTCTAGCGAACGGTTCATCCAGCACAATATTTTCTACTACAAGGGTCAATCGTTTACCTGCTCGATCTGCAGTAAGACCTACCAAGGAATGTTCATGCTGCATAATCACATTAAATTCGAGCATACCACGGAAGACATGAAGAAACAGTACGCGTTTACATGCGAGACCTGCGGCGAAGGCTTCACCATGGAGTCGCAGTACCATGCGCATAAATACCATGTGCACATGATGTTGCCCGTTAGATCTCTGCAGTATCTTCAAGAGCATACCTACATGATATCTGCTGTAAACGCGATAACGTCGGATGGGTCGATTTCGAAATACAGCTGCGACATTTGTAATTTAAGTTTCATGGCTGCAGAAAACCTGCGTCAGCACAAGATAGAGTACACTAATGACGGCGATTACCTATGCCCTCACTGTACCAGAAGATGTCTTACAAATGACATTCTCAAAAAGCACCAGAGTTTGTCTCATAGTAGTTCCAACCCCATTGATTGTTACAAATGTCGCCACTGCAAAGAAGTGCTCCCCGGGAGTGTAGAACTGAACTCTCACGAAGCACACTTTCACCCGATGACCAGCGAGATTCATCGTGACTGCAGTAACCAAGCTTTTGTCTGCACTATTTGTGGTATGAAGTTCGAAAGCCTTGAAAAATTGAATTATCATTCCCAGGAATACTCAAACGAATCTAACTATTTGTACAGTTGTAAAATTTGCAACCATCACTTCTCAGAGCTGCATAACCTAGAGGTTCACAAATTAAGACACACGAATTTGAACTTCATTTTGTCTAAATATCACTGTCCTATATGTCGCGAAGGATTCGAAAATCAAATGAATGTCTGGATTCATGTGATGCATTTCCACCAAAATGCGAAGATTGAGAATCCGGCAACTAATGGTGTACAGAACACGCAACGCTGCGATCAAAGCGCTGTTATGCCCAATTCAGTTTTCAACGGTCAACTGAGAAAGAAGTTAACAATGTGTGTCGATTGTTTGGTGACATTCGATTCCGAGAGGGCTCTATCCTATCATAAAGCACGCTACGTGGACAGAGGGAACCATGTCTGCGAGCAATGCGGTAGGAAATTTGTGTTCCTGAAGCTGCTGAAGCAGCACTTGAAGAAACATGGTGCTGGCATCGGCCGTTTGAAGTACACGTGTCCTGGGTGCGATGAAAGATTCGGCAATGCGGTGGTCAGGTACCAGCATATCATTCATTTTCATGGAAGAAGCATGTGGAAGAGCAAGGTTCTTTATCCCATGATCATTCAGAATGATCCTGAAAGTGCTGCTGAGCTATTACTTCACGAGAAACATGACACGTCATCGCCTCAAGTACATACTCTAACAGACACGCCGCCGATTGCCTCTGCGAATAGTGAACCTGTTGATGCAACCAATTCTACAAATAGCGAATGTAGTGACAGTCAGGAGAAATCCTTATCAACAATCGATTCGTTAGCGGGTGCGAGTGAACAGGATGCACAGAGTGTGAATGCAAGTACGCAGGATTTATATGCGTTCTGTCCAGTATGCAACCAAAAATGTACATCATTAAATGCGTTCGTGATGCATCTGAAGTGTGCACATAGTCAGGTAATTAAGAAAAACATCGGCAACTCGTCTCGGACTTCACCAAAGCACATCGACTGCCTGTCCGATGATACCACCTTCATCAAGGAAGGCAACATGCATCTGAACGAATCGCGTCCGTGTAATGAGGATGCAGCTGTCCATATCTCGGAGGAAGATGATGATTTGGTAGAAGTCATTTGGGAAAAGAAGAGGAATGCTCCTAAAGAAATTGAAGAGCAGGATAATGATGATGAGGTTCACATTCTGTGTTGTAGCGAGCGTATACCGATCGTTAACTATGACGAAACGGTATCAATGCCTGAACAAGTCGTCAAGATAACGTAA
- Protein Sequence
- MARVYVYDRPVDSVLTNASFYDKLNHVTTQLEIKQEPRDTDGNYQSSTLQLADNNAKAAVIGETVVQGTQRLSSLNNKENKLISPKDRDDIDIPNTNVINKRKRKASSFKESKKPEKSARVKYKFSELIQEAQVKCRICCIKFKSLKKLRKHIDNYPEKIEHPCNKCLSLCKLPHLLNNQIWIRRRKSIRSKRVCFYCSFCNARYSKKSHLQCHVFHKHNALLPCSANQSDNPSEIDESMKMKKLEGINKTRKNGKISGNTRTREVSEIGETGKSNETNKARETSKTRENMEARETSKTRENMEARETSKTEESMNVGETSKTTEIDESSEFPLTEGADSHRESSSVQQKGDNETSPSTKKMRQTTITEFWSGNIRITEATSPQQVNTPKKTLKKAIAKQNQTLIQGTDFYVQTPKRSTPIELKRISESRGPEEDIHKKVVTRRSGMITEKVDLGLESGTKITSINNEISTPKDNTTKPNQPFVQIHIDSDTMEGLLSNNVKVEVEDESSEFALQNYSLRRVTRNAIDQASNDLNTTPTNKSIKRIRSRTLSPRMVREKRKHKWTEDELRTKFKCKGCKINLVRCDMVVETKTVDVIQISIREDEELAEMWRKNMKLTRSNVPLTKVDEPITVECLQESEMSNASCDSTKTSSRILFRCKVCKERFPLKKNLCKHLALHHVFYISSICSAMYKTRTELQSHYMKRHCGFKRIQCCVCFEKFSSLVILKQHLILHCIQVLLPKNDRQRNKKLGKCVISEKIQCKVCGKRFRLKSRFKEHQRLCKKMGTRGKKLQKVPNPVETSLTERTLKDSNIELDHDLHNAKSSTVIQPKRLLKGIAVAKGYNVDLSDADKEKFFCITCNTRFQTFQKLCIHDQTYSKAATYVCESCNTAFSNMRLLRNHRRNTHAIDTLREFKYFCSFCTQGFMTKLSVHIHTKHFHAGQTPIIPIPCVDTTQDWLVCKVCSVCNLVFESSERFIQHNIFYYKGQSFTCSICSKTYQGMFMLHNHIKFEHTTEDMKKQYAFTCETCGEGFTMESQYHAHKYHVHMMLPVRSLQYLQEHTYMISAVNAITSDGSISKYSCDICNLSFMAAENLRQHKIEYTNDGDYLCPHCTRRCLTNDILKKHQSLSHSSSNPIDCYKCRHCKEVLPGSVELNSHEAHFHPMTSEIHRDCSNQAFVCTICGMKFESLEKLNYHSQEYSNESNYLYSCKICNHHFSELHNLEVHKLRHTNLNFILSKYHCPICREGFENQMNVWIHVMHFHQNAKIENPATNGVQNTQRCDQSAVMPNSVFNGQLRKKLTMCVDCLVTFDSERALSYHKARYVDRGNHVCEQCGRKFVFLKLLKQHLKKHGAGIGRLKYTCPGCDERFGNAVVRYQHIIHFHGRSMWKSKVLYPMIIQNDPESAAELLLHEKHDTSSPQVHTLTDTPPIASANSEPVDATNSTNSECSDSQEKSLSTIDSLAGASEQDAQSVNASTQDLYAFCPVCNQKCTSLNAFVMHLKCAHSQVIKKNIGNSSRTSPKHIDCLSDDTTFIKEGNMHLNESRPCNEDAAVHISEEDDDLVEVIWEKKRNAPKEIEEQDNDDEVHILCCSERIPIVNYDETVSMPEQVVKIT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -