Apur002623.1
Basic Information
- Insect
- Augochlora pura
- Gene Symbol
- -
- Assembly
- GCA_028453695.1
- Location
- CM052103.1:777615-780808[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.91 64 4.1 0.4 3 23 489 511 487 511 0.92 2 10 0.0069 0.48 10.8 0.9 1 23 517 541 517 541 0.98 3 10 0.00021 0.015 15.6 0.2 1 23 547 571 547 571 0.97 4 10 0.0017 0.12 12.7 0.3 3 23 579 601 577 601 0.92 5 10 0.0034 0.24 11.8 3.5 1 21 608 630 608 632 0.95 6 10 0.00027 0.019 15.2 0.7 2 23 640 663 639 663 0.95 7 10 3.1e-05 0.0022 18.2 1.8 1 23 669 693 669 693 0.93 8 10 4.6e-05 0.0032 17.7 0.6 1 23 699 723 699 723 0.95 9 10 0.00025 0.018 15.3 1.5 1 23 729 751 729 751 0.99 10 10 4.7e-05 0.0033 17.6 1.1 1 23 839 864 839 864 0.96
Sequence Information
- Coding Sequence
- ATGTCTCGTAAAGGAACTCCCTCCGCTTGCAAGTCAAAACAAATCCCGCGAATCTTTCGTAATCGGCGTGGTTTGTGTTCGGTACGTGGTGGTTGGCCTCACGGGGAGGTCGGCGTCGTGGGTGGCTCGGCAATAGGTTACGGTGAATTCAGTCTGCTGACCGCTACGCCGGACGAGGACAAAAGCGAGGAAACAAATAAAAAAGAAACACATAAAGAAGCGAGGGGCGACGAGGACGAGGAGGAAGAAGCGGCGACTGTGACGTACCCGGAGAGGGTTTGGATAGTTGAGAATATCCGGGAGGGAAACGGGACCGTCGGGGATTGTTCGAGCGTCGTCGAGCCGTCAATCGGTAAGACCGCCGATGTCGAGACTGTAGCCGACATCGAGAAATGGTTAAAAACGCGCACGGAGTCCGTGTCGAGCATGGATCTCGACGCGATCAAGTCCGGGGTCGAGGAGGGCGTCGACCGGTACCTGGGCGAGGAACTGCAGCACGCTTTTCTGGAAAAGGACCCTGACGGTCTGTCGATTGACATCGATCTGTCCGACAAGAAACTTAACCTATCTTACGACCCGTTACTGCATGAGCTGCAGAACGAGAAACTGCTCGACGCTTGCGAAAAAGATGGTTTCATACTTCCCGAATTCCAGCTGGATCATTTGGATCCGCTGGCCCTCTCTCCGGACGATATGATGGTGGCTGGAGAGATTCTGCCTTCGACTAGTGCACAACCTACCCTTGTTGTCCCCAACGGGGATGTTGGAGTGATATGCGAGGAAACAGGGCAGAATTCTTTAATTAGGAAAAGCATAATGTCCGATGAGCAGCAGACCCACAAATCTATAGAAGTTTCTATCGATAATTTGCAAGTCATGCAAACGCTAAACAAAGAGACTGTTAAGTCTGGTAAGGACTCTGTTCTGTCGGATGGTACAAATCTGTATATACAAGATTTGGGAGTAGAGAATGTTGTACAAGAGTTAGAGAGCGAAAAGCTGGAAGATAACAACGAGAATGCTATAATCGAACAATTCAAGTCTAAGACTAAGGTCAGATTGGAGCCTAGGATCATTAAGAAACGTAGAAGGATATCAGGGACAGAAAAGAAGTTAGACAACGAGATTAAGATTTCTGGGGAGGATTTTATAGATACAGAGGATGGAGTAATGGCTGTTGTAGCAATATCCACAGATAAGATTTCGAACATGACACAGATTGTCATCAACACTGGAACAGAGGAGCAGATTTACCAGGGGAAAACATCAGAATTGATAGAAGCTACTGGAAATTTTCCTAAGCTGCCAAAGCTGGACACTTCAACTTCTTGGAGCAACACGATGGAGCAGAATGACAACGCTAATAATCATGAAATGGTAATATCCAATGCTTTGGAGGAACTGGGTATCACAGATGACAATTTGCAACCGGTATCTGTTACCGAGCATGGGAAAGTGTGGGCTTGCCCACGCGAGGATTGTTGTAGACAATTTAGCAAGCTTTATGCTCTGAAAGGCCATTTGTTAGCTCATTACGGAGTGAGGCCGTTTAAGTGTGATTTCGAAGGATGCGCCTGGGCGTTTTACTCCGAGTTCAAGCTTAAACGACATAAAGAGACACATCTGAAACGCAAGGACTATGTATGCGAGGTAGAGGGCTGCAATCGACGATTTACAACGATTTATAATTTATGGAGCCACGCGAAGCTGCATAGTCGACCGAACAGGATAGTGTGCCAAGTGCCGAATTGCCAGGAGAAATTCCAAACGAAGCGGGCCCTGGAATTGCACATGAAATCTCACGATCAGAGTCACGCTCCCTACGTCTGTAACCACGAGGGCTGCGGGAAGAGGTACTACAGCAGTAATGCGCTGACTTCTCATCAGAGATGCCATAGCTACAAGGAGGTAGACGTGAAGTGCTCGTGGCCGGGCTGTGGGAAGGTGTTTGACAAGCCATGCAGGCTCAAGGCGCACACGCGTTCCCACACTGGCTGTAAACCTTACCTTTGTACGTTCCAAGGTTGCCAGTGGGCCTTCTCATCGTCCAGCAAATTGAAGAGGCATCAAAAGAAGCACACGAACGAGCGCAAGTTCGTGTGCGACGTTCCCTCCTGCGGAAAAGCGTTCATGAGGTCCGAGCATCTCAAGGAGCACAGACTGACCCACAAAGAGGGCAGATACTTCCAATGTTTCCTATGTAACGCGAAGTTCTCCGCCAAGAGTAGCCTATACGTCCATATAAAGAAGCATCAGGTTAAAGAGGAGACGGACGCTGGCCGACAAGATACTGTAAACGGCCAGAAGCGTGGCAAGCTCAAGGACACGCAATGCTCCAGAGTGAATCCGGTTGTGAAGTCGAAAAGGAAGTCGCTGGAGCTGGACGTAGCCATAGCTTGCATAAACCCGCCCTCTGCTGAAAATCTAGAGTCGGACGATGTTGGTTTAATGAATAACAATGAGGATCAAATTAAAGTCGAACCAGTGCCTCCGCAGGATCAATTGAAAACGCTGTATCACTGTCCGGTTGAGACTTGTACAAGGTCGTATACCACGAAAGCCACGCTAAGGGCGCACATGTTGAAAGTGCACGGCACCCCGGTGGAAGAATGTGATAAACCCTCGAATACCGTATCCGGGAGTCCGATCTGCAACATGGACTACATTTTATACACCGCGCCCTCGGTGTCGGAGCCCACGGATCAAATGATTATGGTCGCGCCTTGCGACGCTGTGATTCTCAGCACACCAAACGAAGCAGATCGTTCTCTGCCGGAACCGGAGCCGCCGCCTCTTTCCAACACGATCAAGACTGCCGAACCACCCGTAAACGTTGCAGCCAATCAGTTGTCCCAACAAGTGAGAAAAGATCAGGGCTCGGCGAGGACTGACTTGACGTTTTCAGACGTGTGGAAGTTGAAGGCTAACGGTGCCGTGTTAGACTCTGTTGTTGGGGCGACCGACGTTGTGTTGGGCGCCAGTGATTTCGAGGAAGGACTGTTGCTCACGGAGGAATTGCCTTCCATGTATTATCAGGACGATGTGGTAGGCACAGAGTATCAGGTACTATTGCTTGACTCCGTGCCGACTGAAAGTACTATAAATCTTCGGGGTCTCGAATAA
- Protein Sequence
- MSRKGTPSACKSKQIPRIFRNRRGLCSVRGGWPHGEVGVVGGSAIGYGEFSLLTATPDEDKSEETNKKETHKEARGDEDEEEEAATVTYPERVWIVENIREGNGTVGDCSSVVEPSIGKTADVETVADIEKWLKTRTESVSSMDLDAIKSGVEEGVDRYLGEELQHAFLEKDPDGLSIDIDLSDKKLNLSYDPLLHELQNEKLLDACEKDGFILPEFQLDHLDPLALSPDDMMVAGEILPSTSAQPTLVVPNGDVGVICEETGQNSLIRKSIMSDEQQTHKSIEVSIDNLQVMQTLNKETVKSGKDSVLSDGTNLYIQDLGVENVVQELESEKLEDNNENAIIEQFKSKTKVRLEPRIIKKRRRISGTEKKLDNEIKISGEDFIDTEDGVMAVVAISTDKISNMTQIVINTGTEEQIYQGKTSELIEATGNFPKLPKLDTSTSWSNTMEQNDNANNHEMVISNALEELGITDDNLQPVSVTEHGKVWACPREDCCRQFSKLYALKGHLLAHYGVRPFKCDFEGCAWAFYSEFKLKRHKETHLKRKDYVCEVEGCNRRFTTIYNLWSHAKLHSRPNRIVCQVPNCQEKFQTKRALELHMKSHDQSHAPYVCNHEGCGKRYYSSNALTSHQRCHSYKEVDVKCSWPGCGKVFDKPCRLKAHTRSHTGCKPYLCTFQGCQWAFSSSSKLKRHQKKHTNERKFVCDVPSCGKAFMRSEHLKEHRLTHKEGRYFQCFLCNAKFSAKSSLYVHIKKHQVKEETDAGRQDTVNGQKRGKLKDTQCSRVNPVVKSKRKSLELDVAIACINPPSAENLESDDVGLMNNNEDQIKVEPVPPQDQLKTLYHCPVETCTRSYTTKATLRAHMLKVHGTPVEECDKPSNTVSGSPICNMDYILYTAPSVSEPTDQMIMVAPCDAVILSTPNEADRSLPEPEPPPLSNTIKTAEPPVNVAANQLSQQVRKDQGSARTDLTFSDVWKLKANGAVLDSVVGATDVVLGASDFEEGLLLTEELPSMYYQDDVVGTEYQVLLLDSVPTESTINLRGLE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00024796;
- 90% Identity
- iTF_00966197;
- 80% Identity
- -