Apur004275.1
Basic Information
- Insect
- Augochlora pura
- Gene Symbol
- -
- Assembly
- GCA_028453695.1
- Location
- CM052107.1:1869734-1872544[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 1.8 1.3e+02 3.2 0.5 2 20 121 138 120 140 0.79 2 14 0.016 1.1 9.6 1.9 5 20 150 165 141 168 0.90 3 14 0.16 11 6.5 3.3 1 23 174 197 174 197 0.92 4 14 5.6e-06 0.0004 20.5 1.4 1 23 203 225 203 225 0.98 5 14 5.4e-05 0.0038 17.4 1.9 1 23 376 398 376 398 0.97 6 14 0.0035 0.24 11.7 0.3 2 21 408 427 407 428 0.93 7 14 0.00031 0.022 15.0 2.6 1 20 450 469 450 472 0.92 8 14 0.019 1.3 9.4 0.5 1 23 477 500 477 500 0.95 9 14 5.6e-07 4e-05 23.7 0.1 1 23 506 528 506 528 0.99 10 14 0.0022 0.15 12.4 6.3 1 23 535 557 535 557 0.98 11 14 0.00037 0.026 14.8 0.4 3 23 565 585 563 585 0.97 12 14 0.00042 0.03 14.6 0.2 1 23 591 614 591 614 0.96 13 14 0.24 17 6.0 0.1 1 23 628 650 628 650 0.93 14 14 0.0013 0.094 13.0 0.0 2 23 914 935 913 935 0.96
Sequence Information
- Coding Sequence
- ATGGAGGCACACGAGAATGAGCAGTATGTTACATTTCCCCTTTCTGGGGTGCACGACGGTATACAGGATAACATTATATCTCATGAGGAGATATGTGAACCTGTTGACGAGTGTGTCCTTCAGGAAGGACTTACTGAAGTATCTGTTACGGATGTAAACGCTGGTATTACGGAGGCACAAGTTGCTGTTGAAATTTTAGCCGAGCATTCTGACGAAGAGGATGAGAATCGCGTGGTATACCCTATATATATTAAGCAAGAAGAGCAACAACAATATACATCAGGGGACGATGAATCTATGGCTGTGGAGGCATTACGGCAACTTGGTGGAATGTATCCTTGCTTCGAGGATAAAAAAGTATCTTGTCCTAATTGCACAAATCTTTTTTCACAGACTGAGTTGGCCAAGCATCATACCACGTGTACAGCTAACAAATTATCCTGCATTACTTGCGGGGAGACATTCGAAAGGAAAATGGACTTGAATAATCATATGGTTTGTCACCAGGTCGACAGACCGCACGCATGCAGGACTTGCGGCAATTTATTTCGTTCCAAAAGCAGCTTAAGATGTCATATGTTGGCAGTGCACCAAGTGGAAAGACCTCACAAATGTACAATATGCGGAGCATACTTCCAGAGGCCTTCTAGTTTGTCTAATCACATGAAAATCCACACTTATGTTGCTGGTCGTGCCATCATGCAGCCACAGGGTAACAATGTATCCCAGGCAGAGGAAACATTTAGGAAATGGCCTGAAGATATGACAGAGACCCAGAATAATCAAGTGCCATCTGCTTCTATACAAACCGTACAAAGCTATGAGACTGTCCAATGGACAGTTCCAACATATAATTTTCATAATGAGCAGACAACTGTTAATGCAATATCCAATCCTCAGGAAAAGATAGACACACTTCATGAATTTACAGTAATGCCGAATGGAGAAGTAGCACAATTCGAATATACCCAACAGAGTAATTTAAATAATCAAGTTAGTCAACAATACAATCTTTCGCTAAACTCTTTCAATAACACGGATGCAATGGTGAAGGTTGAAACCTTACCATACAACAGTGAAAACAGACGAAATTATACAGAGATTGAAACAAATGGTACAAAGCAGCATACTTGCAGGCATTGTGGTATTAGTTTCTCCCGGGCAACAGCGCTGGTCTCTCATGAGAAAATCCATGCTTCCAAGAATTGGAATATGCCCATCGAATGTGAATACTGTGATAAACAGTTCCAGGATGGCAATCACTTGGCCACCCATCAAACGACTTGTGCAAAAAAAATGATGCAGAATAATATAGAACAAGGTACACCTAATAATAAGTGGGGTAAACACGCGTGTTCCGAATGCGGCAAGAAGTTCACTACTAAACAGAAGATGTTTAGACACCAGTGGATACACAGAAAGAAGACGCATTCCTGCGAGGTGTGCGGTTCCCAATTCGAGAAACAAAATGAATTGGATGAACACAGATTGTCTGCGCATCCCGGCGATTCGCCGTTTACTTGCCCAGAATGTGGCAAAAGTTTTGTGTCCCGTCAGGGACTTTGGGAGCATGGCAGAACTCATGCCGGAAGCCCAGCACATTTTCATTGTGATACATGCTCCAAGACATTCTCATCTAGACAGGGGTACTTAATTCACCACaggacacatactggagaaagaccatatggctgtaaattctgttggaaagcatttagggacggcggtactctaaggaaacatgaacgtattcacacgggggagaggccgcatgtttgtcccctatgttcgagagcatttaatcaaaaggtggtcctaagagaacatGTTCGTTGGGTTCACGCGGCAGGTAAAAACGAAACTGAAGTAACTGGACCTCCGTTTCCTTGTCCCATTTGTGGCGCGTTGAATCAAGACCGTGATGAGCTATGCGCCCACATTGTTAAGCATTCTGACCAAATGATAGCAGAGGCTAAAGCCAAGACAAACAACAATCCTCCAAAGCCCAAGCCAACCAAGAAAAAATCAAAAGCATCCCCTGCTACGTTGCAAGGGAAACAAGCATTAGGAAATAGAATAATTTCCTCGGCCGAACAAAACGAAGCGCTTCTATCTATTACAGAGCCGGATGAGCCAGACGATCAGCAGCCAATGTTAAATGATAAACAAGATAGTACCTTCCTTGTAGTCACTACAGACAAACGTAATGAAAATTATATTGCAATATCGGAACTCGAGCCTGATAGCGTACAATTGATGGTAGACGAGAAGCAAGACGATAATATGCACATTTCGCAGACTGATCATAGTCATAGGGAGTCTTTAAATATGATTGCTATAGATAAACAGAATAACGCGACCCATATAGTATCTACCGAATCGGAGCGAAGTGCCCTTCACCCTACAACCAGCCATAACGAAATAACAACCATGCATTTAATACAAACGTCGAAACAAAGCAATACGTTGCACTTAATATCAAAACAGAATGAATCGTTGCCGGTGCTAACATTACCAAATCCTCAGAGCCATGAAAACTTTACCAGTCAAATTGCACAAATAAGTAATAATGATTTACCAATGGATATGGTAACTCATCATTCAGTTAGGGAAGCTCAAAATATGAAGGACCCTAATGAAATTGGGCAGGATACAATAATGCAGGAGGCAGGTTCCCAAACAGCTGTAATTCAGGTTGTACAATATCATCAGCATGAAAGCGATGATGAAGAGGAATTGGTCTGTGGTATCTGCGGCGAAGATTTTAATGATAAAAACGTGTTGATGGAACACGTTAAGATTCACATATAA
- Protein Sequence
- MEAHENEQYVTFPLSGVHDGIQDNIISHEEICEPVDECVLQEGLTEVSVTDVNAGITEAQVAVEILAEHSDEEDENRVVYPIYIKQEEQQQYTSGDDESMAVEALRQLGGMYPCFEDKKVSCPNCTNLFSQTELAKHHTTCTANKLSCITCGETFERKMDLNNHMVCHQVDRPHACRTCGNLFRSKSSLRCHMLAVHQVERPHKCTICGAYFQRPSSLSNHMKIHTYVAGRAIMQPQGNNVSQAEETFRKWPEDMTETQNNQVPSASIQTVQSYETVQWTVPTYNFHNEQTTVNAISNPQEKIDTLHEFTVMPNGEVAQFEYTQQSNLNNQVSQQYNLSLNSFNNTDAMVKVETLPYNSENRRNYTEIETNGTKQHTCRHCGISFSRATALVSHEKIHASKNWNMPIECEYCDKQFQDGNHLATHQTTCAKKMMQNNIEQGTPNNKWGKHACSECGKKFTTKQKMFRHQWIHRKKTHSCEVCGSQFEKQNELDEHRLSAHPGDSPFTCPECGKSFVSRQGLWEHGRTHAGSPAHFHCDTCSKTFSSRQGYLIHHRTHTGERPYGCKFCWKAFRDGGTLRKHERIHTGERPHVCPLCSRAFNQKVVLREHVRWVHAAGKNETEVTGPPFPCPICGALNQDRDELCAHIVKHSDQMIAEAKAKTNNNPPKPKPTKKKSKASPATLQGKQALGNRIISSAEQNEALLSITEPDEPDDQQPMLNDKQDSTFLVVTTDKRNENYIAISELEPDSVQLMVDEKQDDNMHISQTDHSHRESLNMIAIDKQNNATHIVSTESERSALHPTTSHNEITTMHLIQTSKQSNTLHLISKQNESLPVLTLPNPQSHENFTSQIAQISNNDLPMDMVTHHSVREAQNMKDPNEIGQDTIMQEAGSQTAVIQVVQYHQHESDDEEELVCGICGEDFNDKNVLMEHVKIHI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00141985;
- 90% Identity
- iTF_00184100;
- 80% Identity
- -