Apur000550.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Augochlora pura
Gene Symbol
-
Assembly
GCA_028453695.1
Location
CM052104.1:2479809-2482415[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 12 0.0001 0.0073 16.5 4.7 1 23 248 270 248 270 0.98
2 12 0.0086 0.61 10.5 2.2 1 23 275 297 275 297 0.96
3 12 0.00012 0.0083 16.4 1.2 3 23 308 328 307 328 0.98
4 12 0.0014 0.1 12.9 4.7 1 23 408 430 408 430 0.98
5 12 0.0016 0.11 12.8 1.8 1 23 435 459 435 459 0.91
6 12 2.4e-06 0.00017 21.7 1.1 1 23 498 521 498 521 0.95
7 12 1.7e-06 0.00012 22.1 0.6 1 23 554 576 554 576 0.99
8 12 0.00011 0.0079 16.4 3.8 1 23 590 612 590 612 0.96
9 12 0.00015 0.01 16.1 4.7 1 23 618 640 618 640 0.98
10 12 0.0013 0.091 13.1 3.2 1 23 646 668 646 668 0.98
11 12 4.4e-05 0.0031 17.7 6.5 1 23 674 696 674 696 0.98
12 12 0.00021 0.015 15.5 0.3 1 21 702 722 702 723 0.93

Sequence Information

Coding Sequence
ATGGAGATCGAAAGCAAAGATAGAGTTCTAACCGATGATACTGGCGATCTTTGCCGCATTTGTCTTACAGCGAATCAAAATAACCAATATATCTTTGGTGCAATTCGAAATGATACAGGTGCCACGGACACGTCCAACTTTTATGATAGATTTCGTATGTGCAGCGGCGTGGAGATAATGGAGAATGATGGTTTACCTGCCACTATTTGCATGCAATGTGCAAATAAAATCAATGAAGCATATGAGTTAAGGAAACAATGTCAACAAACAGATGCACGGTTGAGGGAACTATATGGAAAGTTGACAAAAATATACAATGCCAATCAGTTTAAGGTCACAAAAGATCAATGTTGCCAAACAGATTATACCTTCAACTCTGGTTTTGTCAAAATAGAAGCAAATATACTTTCTACAGCCGATCATGAGAGATCCTCAGCTGTGGATTGTATCAAAGTTGAAAAAGCAATCAATGAATCTCAGTGCAATGAGTCTAATGAGACAAATAGTCAGCTAAGTAACATTAGTATTAAAAGGATTCCAGCAGGATGTGAGAAAAGTACCTCAGGAAGGGAAACTCACAGAACAAGGAGGACCACTATGTTCAAAAGAGTAACTTCTATGGAAAACCTAAGAAATCATAAAGAGAGGCAGAGACAGTATATTAAAAAGAATGCAAATGTTAAGCGAGATATAGAGAATGATCATTCAGATAATATTAGGGATATGGTTTCTCAAAGACCTTACACCTGTTCAAAATGTTCCAGATGCTATTCCAGCAAGAAGTCTCTGGATAGACATATAGTAACACACAATGAAAAGAAATTTACATGCGATAAATGTAACAAACAATTTCTACAGCTGAATGATCTGATGAAGCATAATAAACTGCATAAAGTCAAGGAGAAAGTTAAGCCAGTATTATGTAGCATATGTAATAAGAGTTTTAAGAAAACTGACACTATGGTGAGACATTTAAACATCCATAAACGGGCGAATCCGAAAGAGGTGCTCTCGATTTTGAAAGAAATCAGGGACAAAAGAAAATTAGAGAATATTAACGAAGAATCGACGACTGAAATGAACAACGCTAGAAAAGAAATTAGAGATTCATACGTAAATACCGAAGGTAGAAACATGATTAAGAAGTATGCTCTAGATTCCGAATTTAGGGATCCTGATCTGTTAAATGCAAAAATCGATGCCTTTGAAAGCACGGCATTTTATCGTTGTAAATATTGCAATAAATATTGTACAACAGACAAGTTACTCCAAGACCATTTATTGTCTCACACGGAAAAGAAATTCGTTTGCAACGTTTGCAACATGAAATTTTTCCGGCAAGATAGACTAGAAAGTCACAAAAAGCGGTATGCGCATAACGAGGACGAGACAAGTTTGGAGATCCAGAAGCCATCCGACGATAAGTCAGCCATCAAACTGATAAACAGTTGGATACGAGAGGAGCTCGATTCGGACAACGAGGAGAAAGGTTTTCCATGTAAAATTTGTGGAAAGTCGTACGATACTAAGAGATCCTTATCAAAACACCAGCTGAATATGCACAACTCCAAGGACGAAGAATGTATAAGTTGTGGGAACCATTGCACTTGCGACGAGAAGGACAAGGACCAGCAGAAAGCGAACGAGATACTGAAACCATATCGCTGCGAGGAATGTGACAAGTCCTTTGAAAAGGAAGTAAAACTACAGAGACATGCGAGAATTCATGACCGCGCCAAAGAACAAGAGGATgcgaacttcaaacgatatttatgccacatatgcagcaagacattcagacagaacacaggactaatgtttcatatgcgaacgcacactggctataagcctcatgtgtgcaagtactgtggtcgaggtttcacatccaattcgaattgcattaatcatgagagaactcacaccggggacaggccgtttgtatgccacttttgcagcgcagctttcgcaaagtcgtgcacccttaaggcgcatattaccacccataccggggaggcaaattaccattgcaaaacatgcgggaaatcattcagaagactgaaatacttgaaagagcacaggttcacgcacaccggcgaaaaaccgtacgcctgcaagatttgtggcacagcgtatagccacaacggTAGTTTATTTGTGCATGAGAAGAAGTGCAAGGCACAGTATCAGAATGCACAAAATTATTGTCAATCGGAGACGTCTTCGCCGGGCGTGACTCCCATTATCACTATTCTGCCTCAGAATCATTTGAATGATATTATCGTCCCATTGAACGTCCAAGACGGCAAAACCTATGTGAACGATATGCAGAGAATGAGTTCTCCCAGCATCGATAGCGTGAGCCCTGTTACCACACCGGATCTCCATGTTCATCCAAATACTGATAACTCGGACGTGTCTCTGTCTGTAAAAAATTTCACTCTTATCGGCCACGTATTTCAGTCGTAA
Protein Sequence
MEIESKDRVLTDDTGDLCRICLTANQNNQYIFGAIRNDTGATDTSNFYDRFRMCSGVEIMENDGLPATICMQCANKINEAYELRKQCQQTDARLRELYGKLTKIYNANQFKVTKDQCCQTDYTFNSGFVKIEANILSTADHERSSAVDCIKVEKAINESQCNESNETNSQLSNISIKRIPAGCEKSTSGRETHRTRRTTMFKRVTSMENLRNHKERQRQYIKKNANVKRDIENDHSDNIRDMVSQRPYTCSKCSRCYSSKKSLDRHIVTHNEKKFTCDKCNKQFLQLNDLMKHNKLHKVKEKVKPVLCSICNKSFKKTDTMVRHLNIHKRANPKEVLSILKEIRDKRKLENINEESTTEMNNARKEIRDSYVNTEGRNMIKKYALDSEFRDPDLLNAKIDAFESTAFYRCKYCNKYCTTDKLLQDHLLSHTEKKFVCNVCNMKFFRQDRLESHKKRYAHNEDETSLEIQKPSDDKSAIKLINSWIREELDSDNEEKGFPCKICGKSYDTKRSLSKHQLNMHNSKDEECISCGNHCTCDEKDKDQQKANEILKPYRCEECDKSFEKEVKLQRHARIHDRAKEQEDANFKRYLCHICSKTFRQNTGLMFHMRTHTGYKPHVCKYCGRGFTSNSNCINHERTHTGDRPFVCHFCSAAFAKSCTLKAHITTHTGEANYHCKTCGKSFRRLKYLKEHRFTHTGEKPYACKICGTAYSHNGSLFVHEKKCKAQYQNAQNYCQSETSSPGVTPIITILPQNHLNDIIVPLNVQDGKTYVNDMQRMSSPSIDSVSPVTTPDLHVHPNTDNSDVSLSVKNFTLIGHVFQS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01071159;
90% Identity
iTF_00966163;
80% Identity
-