Basic Information

Insect: Augochlora pura
Gene Symbol: -
Assembly: GCA_028453695.1
Location: CM052104.1:9374418-9377160[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 9.1 6.4e+02 1.0 0.0 1 8 354 361 354 372 0.88

2 12 0.064 4.5 7.8 0.3 1 20 377 396 377 398 0.93

3 12 3.2e-06 0.00023 21.3 4.2 2 23 444 465 443 465 0.97

4 12 9e-05 0.0063 16.7 0.2 1 23 471 493 471 493 0.98

5 12 3e-06 0.00021 21.4 0.9 1 23 499 521 499 521 0.98

6 12 2e-05 0.0014 18.8 3.3 1 23 527 549 527 549 0.98

7 12 0.00016 0.011 15.9 1.0 1 23 555 577 555 577 0.98

8 12 5.3e-07 3.7e-05 23.7 0.5 1 23 585 607 585 607 0.98

9 12 0.0048 0.34 11.3 0.2 1 23 613 635 613 635 0.94

10 12 2.7e-05 0.0019 18.4 1.9 1 23 641 663 641 663 0.98

11 12 4.7e-05 0.0033 17.6 0.6 1 23 669 691 669 691 0.97

12 12 0.023 1.7 9.1 5.3 1 23 697 719 697 720 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	9.1	6.4e+02	1.0	0.0	1	8	354	361	354	372	0.88
2	12	0.064	4.5	7.8	0.3	1	20	377	396	377	398	0.93
3	12	3.2e-06	0.00023	21.3	4.2	2	23	444	465	443	465	0.97
4	12	9e-05	0.0063	16.7	0.2	1	23	471	493	471	493	0.98
5	12	3e-06	0.00021	21.4	0.9	1	23	499	521	499	521	0.98
6	12	2e-05	0.0014	18.8	3.3	1	23	527	549	527	549	0.98
7	12	0.00016	0.011	15.9	1.0	1	23	555	577	555	577	0.98
8	12	5.3e-07	3.7e-05	23.7	0.5	1	23	585	607	585	607	0.98
9	12	0.0048	0.34	11.3	0.2	1	23	613	635	613	635	0.94
10	12	2.7e-05	0.0019	18.4	1.9	1	23	641	663	641	663	0.98
11	12	4.7e-05	0.0033	17.6	0.6	1	23	669	691	669	691	0.97
12	12	0.023	1.7	9.1	5.3	1	23	697	719	697	720	0.95

Sequence Information

Coding Sequence: atggcggtcgtcgaggaatttgattacctgtgtcgtttatgcgcgactaagactggtattctgatgggattaccgatcttcgaagccggtgatcaaatgcgtaacattgacaagaaaatagccgcgtgtttgccagtgcagGTGTCTATGACCGATCAGTTACCAAAAGTGGTCTGTGAAGAATGTGCTTATAAATTGGACCAGTTATTCGATTTTCGAGAAAAATGCTTGCATACGGAGGGAATGTTTATGGAAATGTTGAAGGCGATTGCTAAAGAAGAAGTTGTGCACATAACGAAGCATGATTTGGATGAAGTTGAAGAAATGAACAGAATTCAAAGGGATATAGATAGAATACAAAATAATATGGACAACGTTCAAAATCCTCAGGAGACAGCTGAAACTACTATACACACAATGCAAGTTATGGATGAAATGGACTTAGCAGGTGGTGAACAGGTTGTAACACAAGACGAAATAGGACAACAGGATGCCAGTATCGAGGTTACAGGTATCGACTGTTTAGATGGCGATACGGTCAGAATGGTCAACGAGCACATACGAGAAGTTTCCAATCATCAAATAGCTGTACATCTAGAAGGAGATATGACCGTAGTTGGAAATTTAACGGTGAGCGATCATTTGGGACAGTTAGGAATAAACTATGTGACTTCGATAACTCCCGAAGATCAAAATCGAGAACAAATAGTACATTATTGTGAAAATGTAAAGTTTGAGTCTGTGCCAATAAAAGAAGAATATCACAGGCTACAAGAAAGATTAAATGCAGAAGAATCTACAAATGTACTTGAAAACAATACACCGCACAGTGATTTTCCTGCAGCTCATTCAGAAGCTGATAGTGATATAGAAGAAACACGAGTTGTGGAGACTGAAACTTCTACACATACAACTACTCAAACAGAAACTATAGCATCTACAAGTCAAGTAACAACGGGAAACTCGGAAATATTAGTGGAATATACAAAAGGTGCAAAGGATTCGTTATTGGAATCTACATTAAATAATCCGACAATTGATGAAACAGGTTCTCATTGGTACGTGTGTCCATTCTGTAACGAAGCTATTTTAGGTTCAAATAATATGATAGCACACTTTGAGCAGTACTTTGTTTGCTGTTCGTGTGGTTTAAATTATACAAACATAGATGCGTTGAATGTACATAAAGAAAGTTGTGATATACATAAAAGTAAAACTCTCATCAGTGAAGTACAAGACAAAGAACCAGAATTGCCCCCATCTCAAAATGGTGTGGACCCAAATGAACAAAAGAAACAAGCTCCAGTAAGGCAAAGATGGactccgaaagtttgcacccactgtggaaaacaatacagaacaaactataagctgcaagagcatatgcgtaaacatactggtgagaaaccttttcagtgtgtaacttgtgaaaaggcgtttagaagtaagatagggcttgcacaacacacagctacgcacacaggccagtttgattacaattgttctacatgcggcaaaggtttccagtcgaaaagctaccttgttcttcaccaaagagtgcattcagacttgaaaccgtttccatgcaacacgtgtgggcaacattttaaaacgaaacaatctttactggatcatcaaaatagacatctcggtgtgaagccgtatgtgtgtgaaatttgtggtagaggttttataactaaaggactatgtaaaagtcatcagaaaatacactcgggaatggataaccgacaatatccgtgcgtggtatgcaataaaatgttcgttagtaaaagctatctcaacacacacttgcgcattcacactggcgagaaaccatacttatgcgaggtctgtgggaaaggttttttaacgcgagtcgatctcaaaattcattcaacgatgcataccggggaaaaaagctttaaatgtgatatgtgtggaaaggtgttcgctagaagggccgcattacgttgtcatagaagattgcacacaggagaacgaccgtacagatgcgatatctgtggaaaaacgttcacacagtttactccaatggctatccataaaagactgcataccggggaacgaccgtacgaatgcgacgcttgcggtaaaacgttcgtatccagatcaaccatgatgtgccacaaaaagaaacatcatGCTACACAACCTGTGAAAAAAGAAGAACCAGTTCCTCGTCAAAATGAAGTGAAAAGTGTGTTACCGGCTGAAATCGTGCTTCGAGATTCCCAGGAAGGAATTCAAATTACGGCTGATTGA
Protein Sequence: MAVVEEFDYLCRLCATKTGILMGLPIFEAGDQMRNIDKKIAACLPVQVSMTDQLPKVVCEECAYKLDQLFDFREKCLHTEGMFMEMLKAIAKEEVVHITKHDLDEVEEMNRIQRDIDRIQNNMDNVQNPQETAETTIHTMQVMDEMDLAGGEQVVTQDEIGQQDASIEVTGIDCLDGDTVRMVNEHIREVSNHQIAVHLEGDMTVVGNLTVSDHLGQLGINYVTSITPEDQNREQIVHYCENVKFESVPIKEEYHRLQERLNAEESTNVLENNTPHSDFPAAHSEADSDIEETRVVETETSTHTTTQTETIASTSQVTTGNSEILVEYTKGAKDSLLESTLNNPTIDETGSHWYVCPFCNEAILGSNNMIAHFEQYFVCCSCGLNYTNIDALNVHKESCDIHKSKTLISEVQDKEPELPPSQNGVDPNEQKKQAPVRQRWTPKVCTHCGKQYRTNYKLQEHMRKHTGEKPFQCVTCEKAFRSKIGLAQHTATHTGQFDYNCSTCGKGFQSKSYLVLHQRVHSDLKPFPCNTCGQHFKTKQSLLDHQNRHLGVKPYVCEICGRGFITKGLCKSHQKIHSGMDNRQYPCVVCNKMFVSKSYLNTHLRIHTGEKPYLCEVCGKGFLTRVDLKIHSTMHTGEKSFKCDMCGKVFARRAALRCHRRLHTGERPYRCDICGKTFTQFTPMAIHKRLHTGERPYECDACGKTFVSRSTMMCHKKKHHATQPVKKEEPVPRQNEVKSVLPAEIVLRDSQEGIQITAD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00761134;
90% Identity: iTF_00860586;
80% Identity: -