Apur007635.1
Basic Information
- Insect
- Augochlora pura
- Gene Symbol
- -
- Assembly
- GCA_028453695.1
- Location
- CM052106.1:28551948-28554294[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.00028 0.019 15.2 2.7 1 23 294 316 294 316 0.97 2 12 0.00021 0.015 15.6 1.7 1 23 320 342 320 342 0.98 3 12 0.0012 0.088 13.1 4.0 3 23 349 369 347 369 0.96 4 12 0.0002 0.014 15.6 2.7 1 23 421 443 421 443 0.98 5 12 0.00077 0.055 13.8 1.4 1 23 448 470 448 470 0.97 6 12 0.00021 0.015 15.5 1.5 1 23 520 542 520 542 0.98 7 12 0.00028 0.02 15.2 0.9 2 23 550 571 549 571 0.97 8 12 9.6e-07 6.8e-05 22.9 2.1 1 23 581 603 581 603 0.96 9 12 0.00022 0.015 15.5 1.6 1 23 609 631 609 631 0.97 10 12 0.00016 0.011 16.0 0.7 1 23 637 659 637 659 0.98 11 12 4.6e-06 0.00033 20.8 2.0 1 23 665 687 665 687 0.96 12 12 8.3e-05 0.0058 16.8 0.3 1 22 693 714 693 714 0.96
Sequence Information
- Coding Sequence
- ATGACAGGGTACTTTAATCTACCCATTAACATGGATAGAATATGCAGAATCTGCCTTGCAGAGGGCACCAATTTATCCCCTATTTTTACTACGGATCAGGATGTGAACGACTTTTCGTGTCTTCCACAAAAGATACAGATCTGTGGATCAATTGAGATTCACGAGCAAGATGGTCTACCATCATTAATTTGTGATATCTGTATTTATAAAGCAAGTGTCGCTCATGAGTTTAGACAACAATGTCAGCATTCGGATGCTAAATTGCGAATGTATTACAATAAACCAACAAAGTCTACTATTGTGGATACATGTACTCAAACAGAGTTGGAAATAGAGCCTGTGTTATCCAAGGAACAGGATGTCAGCCAAGAAGGCTACTTTGTGAAAGAAGAAATGCAGGCAGTAGCTGCTGCCGCCAATTCTCAGGAATACATACATAGTACTTCTTTTTCACGGGATGAGTCTGATTTGAGTACTGGTCAAATTGATATAACAAGTGATAAGCTTTTCATATGCTCAATTGGCTTTGATGGATCCAAAGAGATAGAGAAAGAAGCCTGTATTTCAGAAAGCAACTTGGAGACTGCTCTTAGTCAAGAGGATGAAAATGATCTTTCGGAAACCTTAGATTTACAGTCAAAACCAGTAGAAAGTGAAGATGTTACTCCAAATGTAGAAGAAACTGAGAAAAAGCAGGAAGATGACTTTCTCGAAGAAAGTACATTGAACGACAATGTTATAGAAGAAGAGAAAGTTCCACAAAAACGTACATCTAGTAGAAAATTGAAATCGATCTCTAACAAAACTTATAGTGAAGATGAGATAGATGATAGTTATTATGATCCAGGTAGCGACAGTCATGACTCTGGAGAGACGAAATTCAAATGTAAAGTATGTTCCAAATATTATAACACGCAAAAGGGTTTAAAAAAGCATTCTCTTGTCCACGAAAAAAAATTCAAGTGCGATGTCTGTTTGAAAATGTTCTATAAGCAGGAGAACATGGAGAATCATAAAAAGATACATGCATCAAAACCTCTTGCCTGTAAATTATGTCATGCATGCTTTTCTAAGCCCCAAAGCTTTGCTCGTCACCTAAAATCACACACGGAAAAGCTAAATAACATGATCAAAGAAATCAATACGGATGATCAAAAAGACAACAAAGATCCAAAAAAAGAAATGAAGATTGAAGAAGATACAGATGATGAAACTGGCACTGTAAATGAAGTTGATGAATTTGAGAATGCACCTGAATTGTACAAATGTGATATTTGTAGTCAGTATTGTTCTACCTTAAAAAATCTGAAAAGACATGCGCTGGTGCATGGAGACAAAAAGTATTCTTGCACTGTCTGCAAGAAATGGTTCTTCAGGCCTGACACGTTGAAAAAGCATGCAGAAAAACACGGTCATGGATTATTAGACAATTTAGTGGATAACAATAAATTTTTCGACTCTGATGATGACTCCTTTCCTAATACTACACAAACCAATAATGTACAAGAGAGTGAAAATGTTAAAAAAGAGGAGAGCGACGAGGATGGGTCTGGGGAATACAAATGCCAACATTGTGATAAGATCATGGCAACAAAAAAGGGTCTCAGACGTCATGTAGCAATGCATAAACCTAAACCTGAGCCAGTTACATGTGAAATCTGTAGGAAAGTCTGTGCTAGTCAGGCTCGGCTCGTTCTCCATCAAAGGACACACAAACCGAAAGAGAAAGTTCCAAGGGAATACCTGtgtcatatatgtagtaaagtatatccaagtaactcctccctcacctatcatatgagaactcacactggtgtgaagccacacgtgtgtaaaacctgtaacagtggtttcactaccacaaccagtttagcaaaccacatcaggattcatacaggtgacaaaccgtttgtctgtcatgtttgcagcgcagcatttgctgtcagctcagctttcagaagacatctaaccaggcacactggtgaagcaaactatctctgtaaaacctgtggcaaggcattcaaaagacttagcactctaaaagaacatacctatacacactctggtgagaaaccatacgtgtgcaaaacttgtggAGCTGCATATAGTCATAGTGGAAGCTTGTTCGCTCATCAGAAACGTTGCAGAGTTCAATATGCTGAAGATCCTTTACAAATGGTAGTCGATGATCATCGACACTCTGTTGCGCACCATATTCATGTGAATAACGTACAATCCGCGGTACGTTCACTTGCTGTGATAGGACAAATGTTTTAA
- Protein Sequence
- MTGYFNLPINMDRICRICLAEGTNLSPIFTTDQDVNDFSCLPQKIQICGSIEIHEQDGLPSLICDICIYKASVAHEFRQQCQHSDAKLRMYYNKPTKSTIVDTCTQTELEIEPVLSKEQDVSQEGYFVKEEMQAVAAAANSQEYIHSTSFSRDESDLSTGQIDITSDKLFICSIGFDGSKEIEKEACISESNLETALSQEDENDLSETLDLQSKPVESEDVTPNVEETEKKQEDDFLEESTLNDNVIEEEKVPQKRTSSRKLKSISNKTYSEDEIDDSYYDPGSDSHDSGETKFKCKVCSKYYNTQKGLKKHSLVHEKKFKCDVCLKMFYKQENMENHKKIHASKPLACKLCHACFSKPQSFARHLKSHTEKLNNMIKEINTDDQKDNKDPKKEMKIEEDTDDETGTVNEVDEFENAPELYKCDICSQYCSTLKNLKRHALVHGDKKYSCTVCKKWFFRPDTLKKHAEKHGHGLLDNLVDNNKFFDSDDDSFPNTTQTNNVQESENVKKEESDEDGSGEYKCQHCDKIMATKKGLRRHVAMHKPKPEPVTCEICRKVCASQARLVLHQRTHKPKEKVPREYLCHICSKVYPSNSSLTYHMRTHTGVKPHVCKTCNSGFTTTTSLANHIRIHTGDKPFVCHVCSAAFAVSSAFRRHLTRHTGEANYLCKTCGKAFKRLSTLKEHTYTHSGEKPYVCKTCGAAYSHSGSLFAHQKRCRVQYAEDPLQMVVDDHRHSVAHHIHVNNVQSAVRSLAVIGQMF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00625650;
- 90% Identity
- iTF_01071148;
- 80% Identity
- -