Apur000798.1
Basic Information
- Insect
- Augochlora pura
- Gene Symbol
- ZBTB47
- Assembly
- GCA_028453695.1
- Location
- CM052104.1:9470178-9473636[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 3.8e-05 0.0027 17.9 1.0 2 23 227 249 226 249 0.96 2 14 1.8e-05 0.0013 18.9 1.8 1 23 253 275 253 275 0.98 3 14 0.0036 0.25 11.7 1.4 2 23 282 304 281 304 0.96 4 14 0.0066 0.46 10.9 0.1 1 23 337 360 337 360 0.97 5 14 0.0025 0.18 12.2 7.1 1 21 370 390 370 391 0.95 6 14 7.7e-07 5.4e-05 23.2 0.7 1 23 395 417 395 417 0.95 7 14 1.5e-05 0.0011 19.2 2.6 1 23 423 445 423 445 0.99 8 14 7e-06 0.00049 20.2 2.5 1 23 451 473 451 473 0.98 9 14 0.00076 0.054 13.8 0.2 3 23 681 702 680 702 0.96 10 14 6.1e-05 0.0043 17.3 4.6 1 23 706 728 706 728 0.99 11 14 0.0013 0.091 13.1 1.8 3 23 736 757 736 757 0.97 12 14 0.00015 0.01 16.1 3.6 1 23 764 787 764 791 0.96 13 14 0.0017 0.12 12.7 6.1 3 23 802 822 797 822 0.89 14 14 0.0014 0.096 13.0 2.9 1 23 828 850 828 850 0.98
Sequence Information
- Coding Sequence
- ATGTCGACGACCGCGGAAACCGTACAGTACCCAGCGCAACCGCTTTTTGTAGAATGTAGTGGGCCGCCGCTTCTGGACCAAGATCCAACGTCAATCGCGGTCAAATCGCCGCCGATGTCCAGCATCAAGGAAGAGGAGTGTATTCTGAGCGACGACGACCTGTACTTGGACGACCCGAGTTATCGTTCGCTGCCGAACGAGGCTGCCAACGATTTCACGCAGGATAGGGTCAACAACGAGCCCATCAGAAGGGATGCGAGCAAGAATCCAGTCGCGACGTTTCTAGTTCCGGTCAGAGATCCGCAGACGAAGAATATTCAGAACGTGTTGGTGCCGACAGAGGTGCTGGACGAGTCGGGGATGAAGATAATCAAGAGTATCCTGATACCGATCTGGGAGAAAGACGGAACGTTGGCTTACGATGTGAAGAAAGTGGTGGTTCCCATCGCACCTGAACCCAGTTTGCCAAAGAAGCGGGCTAAGTCGGCGACGACGCTCATCAAGGAGTCGAAAGCTAAACGATCAAAGACTAGTAAAGAAGACTCCAAGTCGAGCAAGCAGGTGGATGATGAAAGTATTGAGAAGAAGATAGAGGACATTATAGAGAAAATCGAGAAACCGAAGGAAGCTGTGGAGCCGAaggaagaggtggacttgatactggcaaatctgcggaccacttgtccgatctgccagaagagcttcaagagcgagcagcagatggacaagcacgtacgcagggagcacaagcagccgtttcgctgcaagaagtgccattacagttacgcaacggcggaagacctcgagaagcacgcaaagatccacgagaaggacacttacatgaagtgtccgttctgtcacctaaagtacaagcggatttccgggatgagggctcaccagatccgcgtccacagcaacgtggatcccgtgtgcatccgcgatcgcGTCAAGGAAGGCGTGACTAGCGTTCCGGAGGAGCCAAAGTCCACTGTCACGGCAGCGACCAAGTACGTCTGCCAGCTCTGTGGCAATGACTACCCCCAGAAACTGTATCTGGTGGCCCACAAGCGCATCGCTCACGGAATTAAGAAGAAAAAGACCAGGGATtacaagtgccacacctgcaagcgttgcttcacctccgaggagggtctcactaaccaccggtgcaacgagcagggtttcctctgcgccgagtgcggcaaggagttcaccacgaactactccctgctgctgcacatgaggaagcacaccggggagcggccctaccagtgcaagatctgccagaaagccttccacaggtcggtgtccctgaggatccacaaaatcactcataccggcgaaaggccctacgtctgcgacctctgcggacacagcttcactcagaggagcagcatgatggctcatcgcaagaaacaccccggaaaccatcctccgcCGCCTCCGCTGTTACTCAGTAGACGGAAGAATAACGTGGACATAGAAAAAGAGGTGTCATCGAGCGCGGACGGCAGTGCGAGCCCAGCTCAACCGCTTTTTGTAGTATGTTCCGGAGTTCCAGACGTGGATCAGGATGCGGACGATCGACGTAAAGCCCCGGCTTCCGATAAAAACGATACCCGAGGTGAAGTGAAATACAGTTCGACGCCGTGCGTAGCCAAGGACGAGGACGTCAAGGATCCTCTGTTGAACGGTGCCGCGGATGACTCCGTGGTGGAGAATCTAGACGTGCGACTGAAGTCGGTTCTGGTGCCAGTGAGAGACCCGGTGACGAAAAAGATCAAGCACAAGCTGGTGCCTGTCGAAAGCAAGGACGAGACGGGCTTGAACATAATTAAAAGTGTGCTGATCCCCTGCGAGGACGTGCACGGTACTCAGTGCTACGAGGTCAGGCAGGTGATTGTGCCGATCAGACCGGAGTCGACTGCGCTGCGACATTCCTTGAGCAAGAACGGTGAGCGGACTAAGCAGGGTAAGGGTGAAAACGGGACAAATAGGTCGGTGAAACAGGAAGACGCGATGCTGGATGTCCGGAACATGTGTCGGATCTGTGAGATAGTTTACAACACGCCGCAATCGCTGAACACGCATGTCCGCCGAGTCCACGAGAAGCCGTACCGGTGCGTCCATTGCCACGAGGCCTTCGTGTCGAAGAgagcctacaaggagcacatgaagacgcacaagctcaaaacgtccgtaggctgtcccttctgccagcagaggttcaagcgcatgttcagcctcaggcagcatcagatccgcgtccacagcaccatagagccaaagtttgtctgcgatcactgcggcaaacgcttcaagctgaagagcgacatgtctcttcacatcgacaagagtcacatgAAGAGCCACGGCCGCATGTTCAAGTTCTCTTGCCATCTGtgcaccatctgcgacaagagctacaagtataggaacagcttctaccgacacgtgctcacccatgccggcatgggaccgtaccactgcgatgtctgcaacgcggactttgagaagaagtcctccttcctcaaacacaggaagatccatccggaaccGCGAGCCAATTCCACGATAGCCGAGATGGCGCAACGAATTTTACAAAACAATTAG
- Protein Sequence
- MSTTAETVQYPAQPLFVECSGPPLLDQDPTSIAVKSPPMSSIKEEECILSDDDLYLDDPSYRSLPNEAANDFTQDRVNNEPIRRDASKNPVATFLVPVRDPQTKNIQNVLVPTEVLDESGMKIIKSILIPIWEKDGTLAYDVKKVVVPIAPEPSLPKKRAKSATTLIKESKAKRSKTSKEDSKSSKQVDDESIEKKIEDIIEKIEKPKEAVEPKEEVDLILANLRTTCPICQKSFKSEQQMDKHVRREHKQPFRCKKCHYSYATAEDLEKHAKIHEKDTYMKCPFCHLKYKRISGMRAHQIRVHSNVDPVCIRDRVKEGVTSVPEEPKSTVTAATKYVCQLCGNDYPQKLYLVAHKRIAHGIKKKKTRDYKCHTCKRCFTSEEGLTNHRCNEQGFLCAECGKEFTTNYSLLLHMRKHTGERPYQCKICQKAFHRSVSLRIHKITHTGERPYVCDLCGHSFTQRSSMMAHRKKHPGNHPPPPPLLLSRRKNNVDIEKEVSSSADGSASPAQPLFVVCSGVPDVDQDADDRRKAPASDKNDTRGEVKYSSTPCVAKDEDVKDPLLNGAADDSVVENLDVRLKSVLVPVRDPVTKKIKHKLVPVESKDETGLNIIKSVLIPCEDVHGTQCYEVRQVIVPIRPESTALRHSLSKNGERTKQGKGENGTNRSVKQEDAMLDVRNMCRICEIVYNTPQSLNTHVRRVHEKPYRCVHCHEAFVSKRAYKEHMKTHKLKTSVGCPFCQQRFKRMFSLRQHQIRVHSTIEPKFVCDHCGKRFKLKSDMSLHIDKSHMKSHGRMFKFSCHLCTICDKSYKYRNSFYRHVLTHAGMGPYHCDVCNADFEKKSSFLKHRKIHPEPRANSTIAEMAQRILQNN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -