Basic Information

Insect: Augochlora pura
Gene Symbol: Snai1
Assembly: GCA_028453695.1
Location: CM052103.1:18995549-18998626[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 8.4 5.9e+02 1.1 0.1 3 16 65 78 63 80 0.74

2 14 2.7 1.9e+02 2.6 0.0 1 23 206 233 206 233 0.89

3 14 0.0098 0.69 10.3 0.1 1 23 238 260 238 260 0.94

4 14 1.4e-05 0.00098 19.3 1.2 1 23 268 290 268 290 0.98

5 14 3.4e-06 0.00024 21.2 0.2 2 23 298 319 297 319 0.97

6 14 5.6e-06 0.0004 20.5 0.7 1 23 325 347 325 347 0.99

7 14 1.8e-05 0.0013 18.9 1.9 1 23 354 376 354 376 0.99

8 14 7.4e-06 0.00052 20.2 0.6 1 23 382 404 382 404 0.95

9 14 5.8e-06 0.00041 20.5 0.1 1 23 410 432 410 432 0.98

10 14 5.8e-07 4.1e-05 23.6 1.2 1 23 438 461 438 461 0.96

11 14 3e-06 0.00021 21.4 0.5 1 23 467 490 467 490 0.96

12 14 1.9e-06 0.00014 22.0 2.0 1 23 496 518 496 518 0.99

13 14 7.5e-05 0.0053 17.0 0.4 1 23 524 546 524 546 0.94

14 14 0.00024 0.017 15.4 0.1 1 23 552 576 552 576 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	8.4	5.9e+02	1.1	0.1	3	16	65	78	63	80	0.74
2	14	2.7	1.9e+02	2.6	0.0	1	23	206	233	206	233	0.89
3	14	0.0098	0.69	10.3	0.1	1	23	238	260	238	260	0.94
4	14	1.4e-05	0.00098	19.3	1.2	1	23	268	290	268	290	0.98
5	14	3.4e-06	0.00024	21.2	0.2	2	23	298	319	297	319	0.97
6	14	5.6e-06	0.0004	20.5	0.7	1	23	325	347	325	347	0.99
7	14	1.8e-05	0.0013	18.9	1.9	1	23	354	376	354	376	0.99
8	14	7.4e-06	0.00052	20.2	0.6	1	23	382	404	382	404	0.95
9	14	5.8e-06	0.00041	20.5	0.1	1	23	410	432	410	432	0.98
10	14	5.8e-07	4.1e-05	23.6	1.2	1	23	438	461	438	461	0.96
11	14	3e-06	0.00021	21.4	0.5	1	23	467	490	467	490	0.96
12	14	1.9e-06	0.00014	22.0	2.0	1	23	496	518	496	518	0.99
13	14	7.5e-05	0.0053	17.0	0.4	1	23	524	546	524	546	0.94
14	14	0.00024	0.017	15.4	0.1	1	23	552	576	552	576	0.94

Sequence Information

Coding Sequence: ATGACGGCTGATTCAGAGAAAGACAGCACGCACTGTTTAATATGCAACAGTAAAGTCGGTGTATCTACTAGGAATAGCATACGTATTTTTAATGACAGTTCTCATACGTCATCAGAGAAACCACTTGTAGATATCATTTGCGCTGTTTTAGAAACAGATCTCAATGAAGAAAATGTACATTCTGTTGTTATATGTAAAAAATGCTATAAATTATTCAACGAGGTTGATGAACTGGAAACCAGGCTAACAGAAGTGAAAGTGGAATTATTTAATAACTATAAAAGAACTGTACAGAAAATATCCGATCTGCAAAACGAAGAAGAATATAATGATCACGATTATATAGAAAACACAGAAAGCCAAGGCACGGATGTGGAATTAAAATATGAAGAGAAAGATGAACAAGAGATGCAAGAGATGGATGGAGAGGAAGAAAGATTAGAAGAGGAGGAAGAAGAGGAGGAACCTTCTTGTGAACCAGAAGAGATTATACTTGACATTGAACCAATGCCTGAAACAAGTAATACTGAAGAAAAGAAGAGGATGAAACGATCAAAGATTCCATCAAAAGTTGATGTTACCCAGGAACGTATTGTAACTAGAGATGGTTCTATGTATACGTGTTTGTTGTGTAACAATGAAGAAGATAAAGTAGTTGGAGATGCAAAATCTATTATTGCACATATGAAAAGTGTGCATGAAACTCGTTTATATATTTGTGACATATGTGGAGATGATTTTAGGAAGAGAACTGAACTGTCGCTCCATCTTGATGACCATGTTGCTAAGGAAGATGGTGATTTTCAGTGTGAAATATGTAATAGAATATTTAGTAACCTGCGCTTGTTCAGGATTCATAAACGGATACATTATCCACAAGTAAAGTCTTGGCCATGCGAGACTTGTGGTAAACGATATAGCTCTAAAAACTTGttagaagagcatatcaatacacatactggtgtgcgaccatatgtgtgtgaaagttgtggcaaagattttgcTTCCAAATATACATATAAAGCACATGTAAAAACACATGAAGTTAGACCTCGGCCTTATGAATGCTCACAATGTAATAAGTCATTTTTAAGCCAGCAAAATCTTAATCAGCATGAAAGAACTCATAATGGCGTCAAGGAATATATTTGCCATCAGTGTGgaaaggcttttggttcaccacataatttggaagtgcacaatatagtacacactggctataagccatacatatgtagaatatgtggtaaagcgtttgctcgcaaagctgaaataagagatcacgaaaggacacataccggagaaaagccgtaccaatgtgaattttgtggagctacatttagtcagaggtcaaatttacaatcccataaacgtgcaacgcattataatgacaagcgatataaatgcgatgactgcggaaaaggattcaaacggcgacggctgttagattatcatataaaagcagcacatactggcgaaagaccgtacaaatgtgaagtatgtacagcgacattcgtttatcctgaacactttaaaaaacacatgcgcatacatacaggagagaaaccatatctttgcgaggtttgtggtaaagcatttaatagcagagataatagaaacgcgcatcgattcatacacagtgataagaagccgtatgagtgtttagtatgtggtatgggattcatgagaaaacccttattgtatgctcacatgcaaactcaaGGCCACCTAAACGATACTATTGTAGTTAATCAACCACGGCTCACTACTGAAGACGATCAAGTGATAACAATTCCTGAATGTGGTGTGGAACTGTTAATGGACGAACCCGAAAATGATCAGTTGGAGGAAGCTGAATTGTATGTGACTGAATTAAAAGACCATGTTATTATACAGCAGCAGAATGAAGATCAAATGTACCATGAAGAAGATGTATTAAACATTTCTACGGAAGAAAATGTTGCCGACGAAGAAGTAGGTCACCTTGTTGACGAAGAGATGACTTTCGTCGAGAATGAAGGAATGGAGTGTAAAGAGGAGGATACAGAGCAAGTAGAAGAAGTATACAATTATAACGAAAGTGAAGACGGAGAAACAATAGTTGTACCAACTACCTCAGAGTACAAAGAAATGGGAGAAGACGACAAGAACGCAGTGCGATTAGTACAGATTCGATTTCCAACATCAGTTACTGCGGAAGGTCGAAGCTGGTTAAGTTTAGTACAAAATACATGA
Protein Sequence: MTADSEKDSTHCLICNSKVGVSTRNSIRIFNDSSHTSSEKPLVDIICAVLETDLNEENVHSVVICKKCYKLFNEVDELETRLTEVKVELFNNYKRTVQKISDLQNEEEYNDHDYIENTESQGTDVELKYEEKDEQEMQEMDGEEERLEEEEEEEEPSCEPEEIILDIEPMPETSNTEEKKRMKRSKIPSKVDVTQERIVTRDGSMYTCLLCNNEEDKVVGDAKSIIAHMKSVHETRLYICDICGDDFRKRTELSLHLDDHVAKEDGDFQCEICNRIFSNLRLFRIHKRIHYPQVKSWPCETCGKRYSSKNLLEEHINTHTGVRPYVCESCGKDFASKYTYKAHVKTHEVRPRPYECSQCNKSFLSQQNLNQHERTHNGVKEYICHQCGKAFGSPHNLEVHNIVHTGYKPYICRICGKAFARKAEIRDHERTHTGEKPYQCEFCGATFSQRSNLQSHKRATHYNDKRYKCDDCGKGFKRRRLLDYHIKAAHTGERPYKCEVCTATFVYPEHFKKHMRIHTGEKPYLCEVCGKAFNSRDNRNAHRFIHSDKKPYECLVCGMGFMRKPLLYAHMQTQGHLNDTIVVNQPRLTTEDDQVITIPECGVELLMDEPENDQLEEAELYVTELKDHVIIQQQNEDQMYHEEDVLNISTEENVADEEVGHLVDEEMTFVENEGMECKEEDTEQVEEVYNYNESEDGETIVVPTTSEYKEMGEDDKNAVRLVQIRFPTSVTAEGRSWLSLVQNT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00734079;
90% Identity: iTF_00864116;
80% Identity: -