Apur013005.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Augochlora pura
Gene Symbol
SCAND3
Assembly
GCA_028453695.1
Location
CM052108.1:10867824-10870294[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 15 0.00034 0.024 14.9 3.9 2 23 289 310 288 310 0.97
2 15 9.5e-05 0.0067 16.7 3.2 1 23 316 339 316 339 0.97
3 15 3.1e-06 0.00022 21.4 2.3 2 23 422 443 421 443 0.97
4 15 8.3e-07 5.9e-05 23.1 1.3 1 23 449 471 449 471 0.98
5 15 0.035 2.4 8.6 1.2 1 23 477 499 477 499 0.96
6 15 7.5e-07 5.3e-05 23.3 0.7 1 23 508 530 508 530 0.98
7 15 2.7e-06 0.00019 21.5 0.5 1 23 536 558 536 558 0.97
8 15 8.3e-06 0.00058 20.0 2.3 1 23 564 586 564 586 0.98
9 15 0.00092 0.065 13.5 0.3 1 23 592 614 592 614 0.99
10 15 3.2e-06 0.00023 21.3 0.3 1 23 620 643 620 643 0.94
11 15 1.7e-05 0.0012 19.0 1.3 1 23 649 671 649 671 0.98
12 15 0.00036 0.026 14.8 4.7 1 23 677 699 677 699 0.98
13 15 4.6e-06 0.00033 20.8 0.4 1 23 705 728 705 728 0.97
14 15 4.7e-05 0.0033 17.6 0.5 3 23 736 756 734 756 0.95
15 15 4.7e-06 0.00033 20.8 5.3 1 23 762 784 762 784 0.98

Sequence Information

Coding Sequence
ATGAATTCGCATTACGATATTGTAAATAAGAGGTTGTGTCATCGTGGACAAGTTGATGTTATAGACATGCCAGTGAAATTAACCAGCCATTATAAATACTTCTTTGTTTATGAAGATCAAATATCTAAGTTCGTTGTATTAAAAGGATTACATGAAAATAATCCAAGGGAAGTGGCTATGAAACTTTTAGATGTATTGGCCATTATTGGAGCACCGCAGGTTATACAAAGTAATAATGGACGTAAATTTGCGGAAGAGGTTGTACAGGAGTTACGTTTTCTGTGGAAAGATTTTATTATTCTTCACGGGGATATTATTGACAACAAGAAAAACAGCAGGGATTTTAAGAACTTACTTGAATGCTGGATTCAGAGAAATCCTATGAGAACATGGCAGGAAGCTTTGAAACATGTACAGATTCTACAAAATTCCACCTTTCGATGCCACAATGGAAAAATTCCATATGATATACTGTTTGGTAGAAACGTACACGAGGAATTTCAAAAACGAACTGGGACCATGACTAGAAACGCGGAAATTTGGACAGAAGAAGACTGGATTAGACTTCAACCCAACAGATCTACTGTTATTGAAAAAGTAGAGACTGAAATGTTTTTTGAAAATACAGATCTTATGGAATTTAAAGACATAGATAGTTCACTTGATGACAACAGCGATTCTAATAATGAAGTCATAATCGAGCATACAGCAGGGCCTCTTAATTTTAATTTCGTTAACGTTAAAAGCGAACCTTTAACTATGCCTGCCGAGGATTCAATGTTGGTAGATACGTTGGCTGATGTTAAAGTAAATGACAGATTGGCCGACGACAAAGACGACTCGGCCTCCGAGAATCAAAATTTGAAGTGCAAGGTTTGCCAAAAGCAGTACATGAAACTTGGCCACCTGAAGAATCATATGAAGTCACACACCAAAGGAAAGAAGTTTGAGTGCACTTTATGCAACAAGACGTTTCATGTTTTAAGTTTATACGAGAAGCATATGCGACAATCGCATAAGCAAACGCATAGTTTAAACAGAACTAGAAGAAACAGAGATCGTTCGCAAGCGAAAACGATGTTAACCGCGAAATCATCTGAATTGAATAGTTCTGCAAATGTAAAGGTAGATAAAACGAAATCTAATGCTGTAGTCGTAGCGCCTAAACCTAAACCGGCACCTAAACCAGCAAAAAGATTGGGTCTCTTAAAGGAGAGGAAAAGAATATCTGTAGGAAAATTAAATAGCGGCGAGTCGTCTTTGCAATGCACCTACTGCAAGCAGAAATTTAGTTTCCCTAGTGTATTGAAGAGGCACATGCGGTCCCACACGAATGAAAGACCGTACATTTGCGAGATCTGTAATAAGAGTTTCAAACAGTTAGGGCATCTTACTCAACATGCGCTTACACACAGTGACTATCGTTCATTCCGTTGCGCGTGCTGCGGGACCAGATTTGGATCTATCGGTGCATTGAGGATGCATACGCAGACACACAAGAAGAAAGAATCCCACCGTTTATTCGAATGTGAGAATTGTAAGAAGGTCTTCACTTCTAAAAGCGTGCTAGAGCGGCATATACTGTCTCACTCGCACGAGCGCCAATTTGCGTGTGTCATTTGTGGGaaaagattcaagcaagcgggccacgtgaagtcacacatgctggttcataccggcgagcgaaaatttgaatgtacggtatgtaagaagagattcagcttgtcgaactcattgaaaaagcatatgtatgtgcacaatggggaaaagccgtttcagtgcgacgtgtgcggcgcgcgattccttgaaaaaaggaacctgaccggacatctaatgactcacacGAACGAACGTCCGTTCCGCTGCAAGATATGTGGGAAACGGTATACTTTGGCGGACACGTTACGCCGTCACATAAGCGCAGCGCACGAAGAGGGTCGCACGTACCAGTGCGAAATCTGTGCGAAAATGTTCAAACAATTGGCCCATCTTTCTGTGCATAAGAAAGTGCATAACGACGAGAGGCCGTTCCAGTGTCATTTGTGCGAGAAGAACTTCAAGCATAAAAACGTTCTGAAATCTCATTTGGCCATTCACGCGAACGTCAGGCCGTTCGAATGCGATGTCTGCAAGGCCACTTTCGTAAGGAAGACCAATTTACAAACGCACATCTCGTCCGCCCATATGAACGAGAGACCGTACGGCTGTACCATTTGTGGCAAACGGTTTAAACAAATTAGTCACTTAAACGGTCACGTGGTGGTGCACAGTAATTTAATGCCTTTCCAGTGCAATTTCTGTGACCGACGCTGTAATAGACTTGACAATTTGAAAAAACATATGCGCCTTCACACGAAAACCGCGGGATATATTCCTAAGGAGGAATATATCCTACCGTAA
Protein Sequence
MNSHYDIVNKRLCHRGQVDVIDMPVKLTSHYKYFFVYEDQISKFVVLKGLHENNPREVAMKLLDVLAIIGAPQVIQSNNGRKFAEEVVQELRFLWKDFIILHGDIIDNKKNSRDFKNLLECWIQRNPMRTWQEALKHVQILQNSTFRCHNGKIPYDILFGRNVHEEFQKRTGTMTRNAEIWTEEDWIRLQPNRSTVIEKVETEMFFENTDLMEFKDIDSSLDDNSDSNNEVIIEHTAGPLNFNFVNVKSEPLTMPAEDSMLVDTLADVKVNDRLADDKDDSASENQNLKCKVCQKQYMKLGHLKNHMKSHTKGKKFECTLCNKTFHVLSLYEKHMRQSHKQTHSLNRTRRNRDRSQAKTMLTAKSSELNSSANVKVDKTKSNAVVVAPKPKPAPKPAKRLGLLKERKRISVGKLNSGESSLQCTYCKQKFSFPSVLKRHMRSHTNERPYICEICNKSFKQLGHLTQHALTHSDYRSFRCACCGTRFGSIGALRMHTQTHKKKESHRLFECENCKKVFTSKSVLERHILSHSHERQFACVICGKRFKQAGHVKSHMLVHTGERKFECTVCKKRFSLSNSLKKHMYVHNGEKPFQCDVCGARFLEKRNLTGHLMTHTNERPFRCKICGKRYTLADTLRRHISAAHEEGRTYQCEICAKMFKQLAHLSVHKKVHNDERPFQCHLCEKNFKHKNVLKSHLAIHANVRPFECDVCKATFVRKTNLQTHISSAHMNERPYGCTICGKRFKQISHLNGHVVVHSNLMPFQCNFCDRRCNRLDNLKKHMRLHTKTAGYIPKEEYILP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00966147; iTF_00184072;
90% Identity
-
80% Identity
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