Basic Information

Insect: Atta texana
Gene Symbol: -
Assembly: GCA_004480015.1
Location: QEPB01035280.1:1-3398[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.06 7.4 7.7 1.0 2 23 100 121 99 121 0.95

2 9 0.05 6.3 8.0 0.8 3 23 133 153 131 153 0.96

3 9 0.0011 0.14 13.1 0.2 1 23 230 252 230 252 0.98

4 9 0.013 1.6 9.8 0.3 1 23 324 346 324 346 0.97

5 9 1.5e-05 0.0018 19.1 0.9 1 23 352 374 352 374 0.97

6 9 0.0019 0.24 12.4 2.6 1 23 436 458 436 458 0.97

7 9 0.00065 0.081 13.9 2.2 1 23 464 486 464 486 0.99

8 9 0.83 1e+02 4.1 0.6 2 23 577 598 576 598 0.96

9 9 5.3 6.6e+02 1.6 0.3 3 23 607 627 606 627 0.69

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.06	7.4	7.7	1.0	2	23	100	121	99	121	0.95
2	9	0.05	6.3	8.0	0.8	3	23	133	153	131	153	0.96
3	9	0.0011	0.14	13.1	0.2	1	23	230	252	230	252	0.98
4	9	0.013	1.6	9.8	0.3	1	23	324	346	324	346	0.97
5	9	1.5e-05	0.0018	19.1	0.9	1	23	352	374	352	374	0.97
6	9	0.0019	0.24	12.4	2.6	1	23	436	458	436	458	0.97
7	9	0.00065	0.081	13.9	2.2	1	23	464	486	464	486	0.99
8	9	0.83	1e+02	4.1	0.6	2	23	577	598	576	598	0.96
9	9	5.3	6.6e+02	1.6	0.3	3	23	607	627	606	627	0.69

Sequence Information

Coding Sequence: AGACTTCACGGAGAAGAGTTGGCAGCTATGCATCAACAGAATATGGATTTCCCATTATCCAGTCCCAAAAGTAAACAGCCACAAATATCAATTTCTGAAGGtaGTACTTCTCGAACAAAAGACGAATCTATCGAACAAGTGATTCAGATAACGTCACGTAACAATGTAACGACATCTCCAAAAATCACAGGATCTCAGCCGCATTCATTGCCGTCGCTTCTTTTGGATACTCGTGCTCTTCCGGATGCTCCACTGGTTTGGGTATCACGACCAGATGGCACACTAACGAAGATGCTCAAGTGCCGTCATTGTCCGTATATTTCATCGCGACGTGCGGAAGTGCGCGACCATGAGACAATGCATGTAGACATGCCAACTCAGGGTCCCTTGATTGCCTGCACTGATTGTAGCTTTACTTGCACGCGTCGGGAAGTCATGATCGCACATACAGAAATGCATGCAGGATCTCTCGGTACTGTTCACTGTCTTTTCGATGAGACGCGACCTGATTCTCAACAGGTGAGTGATCTGGTCACTCTGCTTGGCTTGACGCACACTCCCATGCTAGGCACCGAGCCTGATCTACAGGATTCTCGTCTGGTGCATTGTTGCGGCAAGTGTCCAGCACGATTTCTGTGCGAAAAGGAGTTGCGTATCCATCTGCGTTACCACACCACATTATTAGCATATTCATGCCAATGGTGCTCGTATGCAGCGCGACAACCGGCGCACCTGTTAGCTCATCAAAAGGCGCACTCATCAGAATATCAAGAGCGTACCAAATATCTGTTGACCTTGTACGGCCATTCGCAGCGTTATCCACCGCCCACGACAGCGTGTGTTGAAGTGGAGAGTCGGGAAAATAATGACAGTGCGTTGAACGTCGCGTGGATTGTTGTTGAAATCAAcgaaaattcaaacaattataACAGTGTCAATGGCACGACCGTTCAAAGGACCGGTCAAGTGTTTACGTGTGCTAAGTGTCCGGCTCGTTACTTCAAACTCGATGCTTTGGAATACCACATGACGCTTCATGGTTCAAATAATCGATACAAATGTAATGACTGTGATTATTCATCGAAAAcggaacaaaatttattaaaacatcagGTGGTACATCGACGACATAATGAAACCAGCCAAGCAACTGCGGAGCTGTCTACCGTAGATTCCGCTTCAACATCCTCTCCCGGATCTCCACTGCAGTCACCTCCGGATCCACAATTTGGTGTCTTTATGCGCGGCAATCCTAATTTCGTTTATCCAGGTTACCTACGGAATGGTCGTCTGAAGGAAAAACGTTATAAGTGTCACAAATGTCCATCCGCTTTTGAAAAGCGTGAACAATATAGAGTTCATCTGACTTTGCATGGTGCGAAACAACGCTATCGCTGCACTACGTGCGACTATTCAGTCAAATATTATGCCAATTACGTACAGCACCTAAAGAAACATCAGGCAAACGCAGAAGCACAGGCATCTCGGAGACAATTCGAGGATGATCGGATTTCAATCGATAGCGATAGCATTATTGATGTTGTATCGGCATCATCACGTAAGTCATCGAGATCGTCTGCTGCTGTTAATATGACGGCATTTTCCTCCGCTAACGCGTCCAATAACAATGCTGCGCTACAACCTTCTAACCAGGATAGGCAGAGTTTATTGTTAATGCAAAAGAAGGGTATCATTTCATCAACGGGCGACGCCGATGTGGAGATGATCCGTTGCCAAAGCTGCCCGTTCTCCACCATCGATAAGGATGTCATGGATTCACACAAGCGTCGCCATGGTATTGAACGCATGACGCCGCCGTGCCCGCATTGTGATTACATTCCGCGAAAAGACGAAAACGTCGGTGAGCATATCAAGCTGCACTTCACAAGACTGTACAAACCTGAATCCTATCTTATTGTCGAAATGCTGACGCTgacaacagagaaaatatCTGCAAACAACAAAAATGATAGGGGTCAACGATTGAAGGAACTACTGTTCAAGGAATGCGCCGATGGTAGATTCCTACCACTTACCGAAACGATCAACACTTATACTTTAGGTACTTCCTCTTCAAAAGTAAAAACTGCCAAGGAGAAGATTATTATAGATTCAAACACAGGCGAGACCAAGCATCGTCTTGCCACATAA
Protein Sequence: RLHGEELAAMHQQNMDFPLSSPKSKQPQISISEGSTSRTKDESIEQVIQITSRNNVTTSPKITGSQPHSLPSLLLDTRALPDAPLVWVSRPDGTLTKMLKCRHCPYISSRRAEVRDHETMHVDMPTQGPLIACTDCSFTCTRREVMIAHTEMHAGSLGTVHCLFDETRPDSQQVSDLVTLLGLTHTPMLGTEPDLQDSRLVHCCGKCPARFLCEKELRIHLRYHTTLLAYSCQWCSYAARQPAHLLAHQKAHSSEYQERTKYLLTLYGHSQRYPPPTTACVEVESRENNDSALNVAWIVVEINENSNNYNSVNGTTVQRTGQVFTCAKCPARYFKLDALEYHMTLHGSNNRYKCNDCDYSSKTEQNLLKHQVVHRRHNETSQATAELSTVDSASTSSPGSPLQSPPDPQFGVFMRGNPNFVYPGYLRNGRLKEKRYKCHKCPSAFEKREQYRVHLTLHGAKQRYRCTTCDYSVKYYANYVQHLKKHQANAEAQASRRQFEDDRISIDSDSIIDVVSASSRKSSRSSAAVNMTAFSSANASNNNAALQPSNQDRQSLLLMQKKGIISSTGDADVEMIRCQSCPFSTIDKDVMDSHKRRHGIERMTPPCPHCDYIPRKDENVGEHIKLHFTRLYKPESYLIVEMLTLTTEKISANNKNDRGQRLKELLFKECADGRFLPLTETINTYTLGTSSSKVKTAKEKIIIDSNTGETKHRLAT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -