Basic Information

Insect: Atta texana
Gene Symbol: PRDM1
Assembly: GCA_004480015.1
Location: QEPB01014067.1:1-3849[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 5 1.5e-05 0.0018 19.1 2.5 1 23 582 604 582 604 0.99

2 5 4.4e-06 0.00055 20.7 5.1 1 23 610 632 610 632 0.98

3 5 8.9e-07 0.00011 22.9 4.2 1 23 638 660 638 660 0.98

4 5 0.00058 0.073 14.1 1.5 1 23 666 688 666 688 0.97

5 5 3.9e-05 0.0048 17.8 0.2 1 22 694 715 694 715 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	5	1.5e-05	0.0018	19.1	2.5	1	23	582	604	582	604	0.99
2	5	4.4e-06	0.00055	20.7	5.1	1	23	610	632	610	632	0.98
3	5	8.9e-07	0.00011	22.9	4.2	1	23	638	660	638	660	0.98
4	5	0.00058	0.073	14.1	1.5	1	23	666	688	666	688	0.97
5	5	3.9e-05	0.0048	17.8	0.2	1	22	694	715	694	715	0.96

Sequence Information

Coding Sequence: CAACAAGTACAACAATCAACGCTACCAACGGAAATTTCGCCCGCCGACGTGATATCGCCTCTGAAAGATCCAGCAATCTACGAGAGACGTCAGATGACACCAACGGATGGTTCCGTGAGGTCAGACGAGGGTTACCATTCAAATGGCTATCACGATGAGATTTTGACACCACCAGAGGAAAGCAGTGAGTCCGATAGTGAGAACAACTACGTATTGGATTTCAGTAAAAATGCCAAATCGTCAGTGTGCAACGATGAGATTCTGAAGCAGGACAACACCGCGGTGAAAAACGAATATAGGAAAGTTAAGATCAAAATTTCCAAGACCTACGGTAACTTCCAGGCGACAAAGGGTATAACTGAAGGCCCGAAGGATAAGGAGCAGGAATTGTCTAGCCGAGCAGTTACTCCGGAACTCCAAAAGCCGGTATCACCTGTTATTCTACAGAAAAGCACGGTTCTATCGACCGTGACTGAGGATGAGATATCTGAGAAGAACATGAAACCTTTCTACGAGCCGGAAGTCAAAGGTGGTAATCTGCCAATGTCCGGCAGATCTGCCTACATAGCTAACCCCAGCAGTTCTATTCTGGAGAACATTCTACTACGTAACAGCACAGACAACAACAATAATAGCCACAACCATCATCACAATGGCGGCTCGCAACAACATCATCAACATCATCAGCTGCATCATCAGACTCACGTAGATTCAGTGACGCCGCCACCGTCCAGTCCCACCGAGATGGCATATTCCTACAAGAAGTCTCATCGTTATGGAAACATTTTGCCCTGCAGCCCGGACTCTAGTTCGAATCTGCCTCTACAAACGGATTCGTGCGTGAACTCGACTAGCGGCAACGGTGGTGCGCTATCTAGTATGCAGAGTCCCACTGGTAATCTACACTCCAGTACAGGAGGGCTACATTCAAGCACCGGTGGAAACAATGGCAGCTTACCGCCGCATCCGGGAAGTTTGCATTCGTCTAGCAATGCCGGTGGCGGCATACATTCCAGCACGAGCGTGCTCTCATCTAACGCGATGCTAACGTCTACCAGCCCGCATTCGGCATCCACAACGGCAAATGGTTGTCTGCCCAAGCGAAAGACCAAATCGCCGTCGCCATCGTCAAATCAGAACGGTGTATCCACCCCAACAACGATCCTTTACTCCGGCAGCTCCGGGGCCGCTGGCTGTCAGATCGAGTCCGCCAGTCCGGTTTACCCAAACTCCGCTGGCAGTAGCAGTAGCAGTACCAGCAGTAATCAGAGCATCTCGCCGATTTCGCCGATTCAATCGCCCTCATCCTACAGTCCGTATGGTAGTCTGTACGGTCATCAGAATAGTTCGCTACATCACAATATGAGTTCGTCGTTGTCTATCAACTGCACCGCCTATTCGCCCACGCCGAGCGGCAATGTCGTTTACGAGAGGACGACGGATGGCAGACGGCTAGAGGCCACCAGCAGTGGCGGCCATCAATTGCCCACCTCATCAACCATGCAAATTGATGGCAACCAGGCATTGATCACCGGCACGCACAATCTTCATCTCGGTCATCATCCGGGTCTTACCATTCATCCAAATTCCTCGTCATCTCTCAACAGATACTCACCGGCGAGTTCCTTATCACCGGACGATCACGGTTGTTCCCAGAGCGGCTCTCTTAGCCCCAATTCCCAGGGTTCGAGAGGTTACAGATCGCTGCCTTATCCGCTCAAGAAAAAAGACGGCAAGATGCATTACGAATGCAACGTCTGTTGCAAAACCTTTGGTCAGCTATCAAATCTCAAGGTACACCTGAGGACGCATTCTGGCGAAAGGCCCTTCAAATGTAACGTTTGTACCAAAAGCTTCACTCAACTCGCGCATCTCCAAAAGCATCATCTCGTGCATACCGGTGAAAAGCCGCACCAATGCGAGATATGCAAGAAGAGGTTCAGCTCGACTTCGAATCTAAAGACCCACCTTAGACTGCACTCTGGTCAAAAGCCATACGCCTGCGACCTTTGCCCCGCCAAGTTCACCCAATTTGTTCATTTGAAACTGCACAAGAGGTTACACACAAACGAACGACCGTACACCTGCCAAGGttgcgataaaaaatatattagcgCGAGCGGCCTCAGAACTCACTGGAAGACAACGAGCTGCAGACCAAATAACATCGAGGACGAGCTCGCGCTTGCCGCGGCCGTGGGTTCGCCGACGTATTACGAGTATGGCCCTGATATGAATGTTGGAAATATGCCCAAGGAATGCGAATTGGAGCACATTGATAATTATGACAGGCATGGATCGACACATGGCCCGCACTCCACGTCCCTTCACAACTTGGAAAATTCCGTGGGTCGACCGAGCGTCATAGAAACGTCCCAACCACACATTATCGAGTGTACATAA
Protein Sequence: QQVQQSTLPTEISPADVISPLKDPAIYERRQMTPTDGSVRSDEGYHSNGYHDEILTPPEESSESDSENNYVLDFSKNAKSSVCNDEILKQDNTAVKNEYRKVKIKISKTYGNFQATKGITEGPKDKEQELSSRAVTPELQKPVSPVILQKSTVLSTVTEDEISEKNMKPFYEPEVKGGNLPMSGRSAYIANPSSSILENILLRNSTDNNNNSHNHHHNGGSQQHHQHHQLHHQTHVDSVTPPPSSPTEMAYSYKKSHRYGNILPCSPDSSSNLPLQTDSCVNSTSGNGGALSSMQSPTGNLHSSTGGLHSSTGGNNGSLPPHPGSLHSSSNAGGGIHSSTSVLSSNAMLTSTSPHSASTTANGCLPKRKTKSPSPSSNQNGVSTPTTILYSGSSGAAGCQIESASPVYPNSAGSSSSSTSSNQSISPISPIQSPSSYSPYGSLYGHQNSSLHHNMSSSLSINCTAYSPTPSGNVVYERTTDGRRLEATSSGGHQLPTSSTMQIDGNQALITGTHNLHLGHHPGLTIHPNSSSSLNRYSPASSLSPDDHGCSQSGSLSPNSQGSRGYRSLPYPLKKKDGKMHYECNVCCKTFGQLSNLKVHLRTHSGERPFKCNVCTKSFTQLAHLQKHHLVHTGEKPHQCEICKKRFSSTSNLKTHLRLHSGQKPYACDLCPAKFTQFVHLKLHKRLHTNERPYTCQGCDKKYISASGLRTHWKTTSCRPNNIEDELALAAAVGSPTYYEYGPDMNVGNMPKECELEHIDNYDRHGSTHGPHSTSLHNLENSVGRPSVIETSQPHIIECT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00230337;
90% Identity: iTF_01407691;
80% Identity: -