Basic Information

Insect: Atta texana
Gene Symbol: -
Assembly: GCA_004480015.1
Location: QEPB01014608.1:173-2098[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.13 17 6.6 4.5 1 23 336 358 336 358 0.98

2 10 0.49 61 4.9 3.6 1 21 364 384 364 387 0.96

3 10 0.00016 0.02 15.8 0.6 2 19 394 411 393 415 0.89

4 10 9.8e-05 0.012 16.5 4.5 1 23 421 443 421 443 0.98

5 10 0.00096 0.12 13.4 0.1 3 23 451 472 449 472 0.93

6 10 0.13 16 6.7 1.8 1 23 479 502 479 502 0.98

7 10 5.3e-06 0.00066 20.5 0.8 1 23 506 528 506 528 0.97

8 10 0.00073 0.091 13.8 0.5 1 23 534 556 534 556 0.98

9 10 1.2e-05 0.0015 19.4 1.3 1 23 562 584 562 584 0.96

10 10 8.4e-07 0.0001 23.0 2.8 1 23 589 611 589 611 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.13	17	6.6	4.5	1	23	336	358	336	358	0.98
2	10	0.49	61	4.9	3.6	1	21	364	384	364	387	0.96
3	10	0.00016	0.02	15.8	0.6	2	19	394	411	393	415	0.89
4	10	9.8e-05	0.012	16.5	4.5	1	23	421	443	421	443	0.98
5	10	0.00096	0.12	13.4	0.1	3	23	451	472	449	472	0.93
6	10	0.13	16	6.7	1.8	1	23	479	502	479	502	0.98
7	10	5.3e-06	0.00066	20.5	0.8	1	23	506	528	506	528	0.97
8	10	0.00073	0.091	13.8	0.5	1	23	534	556	534	556	0.98
9	10	1.2e-05	0.0015	19.4	1.3	1	23	562	584	562	584	0.96
10	10	8.4e-07	0.0001	23.0	2.8	1	23	589	611	589	611	0.96

Sequence Information

Coding Sequence: atgcatgTTATCAAAATAGAGACTTGTTCTGCTACTTACTTCTACATTTCTAATTCGATTTCTCTTCAGACAGAggtaaaaaatgaagaatcaGCATTGCTGGTGGGTACGTCATCATCAGATAATAACAACAGTATTGAAAAAGATCTTAATTCTACTAGAAACAATCAAACCGAAGACATAGTCAAAGATTCAGTGGAAcagcagaaaaaaagaaataccaCGAAGATTTTAAGGAGCCTTCGTAGtcaacaacagcagcaacaagTTTCCAAGTGCAATGATGAAAATGCAGGAAAAAGTGTACAGACTCAAGGTACAGAATCATCACCGTCTCGTTGGCTTAGAAGCAGGCAAAGCGCAGATTCATCTGTGGTGGACAACGAAAAGATTCCGATTGCAAATAGATTAAGGAGTCACAACAATGTGGAAACTAACACCAATAATCGTTctgtgaataataataataataataataataataataataatagcaataatgAGAATACAGAAAAACAATGTCCAAagcaacagcaacaacagGATTCATCGGTGACGATTCAGTTACCGACTACagctttgaataaattattgacgATTGTTTCTAGCTCTCCCGATATCGACGTTTCTGTAAAAGAGACAAGAAATCGGAATAACGATGCCGAAGATATTAGCTTTACTGTGGAACTGTGTAAGAAACAAAATGATGAGGTATCGACGGTGCGAGCACGAGTTTTTCCTGATCAGGGCTATTGTCTAGTCGATACAGCAATCGTACCTTTGTTGCAAAGCGAAAACAGAACAGAAGTGAACAGTATTGTCAATAGCATTCTTAGCAATACGTCGTCGAAAAACAATAGTCCTGTGGCAAGGTTAAAAGATTTAGCGGAGTTGGAACAGCAACTGGAAGCGACACAGAATCCAGAAGAGCTCTTTAAAATTGATGGCGAGGAGATTAAGGTAGATGATAACGTGGAGCACGTGGTAAATGGAACACAGAATGGTTATGCATGCAAACTCTGTCGAAAATTCTATGAACGCCGAGATAAGTGTACAGTTCATGTGAAGACACATCTCGGTATCAAGCAATATACGTGCGTCGTCTGCAACGCCAAGTTTGTTTGCAAATCTGATGTAATGAAGCACATTCGATGCTCCCATACTAATCCCAGACCCATACAATGTCCCAAATGTCCTAAACGAttcaaatctaaattttatctagCTGAACATGACAATGTTCATAAGGGTATACGACCGTACAGTTGTACAGACTGTGAACAGAGTTATCACCACAAGGTTTCATTACAGATCCATATGAAGTCGCATTTACCACCGCAAAATCTAGCCTGCGAATATTGTGGCAAAGTCTTCCCGTTTCGTACGCGATTACTCGGCCATATCGCAAGTGTTCATATGAAAAAACGACGTAATTTTCGTTGTCGCTTTtgttataatctttattcGAGTCTATCGGTGCTAAACGAACATATCAAAACTCGCCATGCGACCACATATACCTGTGAGACATGTGGCAAGACTTTTAAAGTCGCTTCCAAGTATAAAGCGCACGTACTGCAGCACTCCAATCCTAAACCGTTTGTGTGCAATGTTTGCAATAATCGTTATGCTTCTAAAGCGTTTCTTAATGAGCATTTGTTAAAGCATGAGGGTTTACGTAAACACATATGTCAAGAATGCGGCGCGAGTTTTGCACAAGCGAGTCATTTGGCTGCTCATCGTCATGTACATGGAGAAAAGACGCACGCGTGCCCCGAATGcggtaaaaaattcaatcgtCGTGACAACATGAAAGTGCATCGTAAACGGCATTTCGATGAGAAAAAAACTAGCATAGCTAGCAAGCAGAAAGTTACATCCAATAATAACGTAAGTGCTCTTACTACGACTGTTAACGAGaagtaa
Protein Sequence: MHVIKIETCSATYFYISNSISLQTEVKNEESALLVGTSSSDNNNSIEKDLNSTRNNQTEDIVKDSVEQQKKRNTTKILRSLRSQQQQQQVSKCNDENAGKSVQTQGTESSPSRWLRSRQSADSSVVDNEKIPIANRLRSHNNVETNTNNRSVNNNNNNNNNNNNSNNENTEKQCPKQQQQQDSSVTIQLPTTALNKLLTIVSSSPDIDVSVKETRNRNNDAEDISFTVELCKKQNDEVSTVRARVFPDQGYCLVDTAIVPLLQSENRTEVNSIVNSILSNTSSKNNSPVARLKDLAELEQQLEATQNPEELFKIDGEEIKVDDNVEHVVNGTQNGYACKLCRKFYERRDKCTVHVKTHLGIKQYTCVVCNAKFVCKSDVMKHIRCSHTNPRPIQCPKCPKRFKSKFYLAEHDNVHKGIRPYSCTDCEQSYHHKVSLQIHMKSHLPPQNLACEYCGKVFPFRTRLLGHIASVHMKKRRNFRCRFCYNLYSSLSVLNEHIKTRHATTYTCETCGKTFKVASKYKAHVLQHSNPKPFVCNVCNNRYASKAFLNEHLLKHEGLRKHICQECGASFAQASHLAAHRHVHGEKTHACPECGKKFNRRDNMKVHRKRHFDEKKTSIASKQKVTSNNNVSALTTTVNEK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01523594;
90% Identity: iTF_01476476;
80% Identity: -