Atex001774.1
Basic Information
- Insect
- Atta texana
- Gene Symbol
- -
- Assembly
- GCA_004480015.1
- Location
- QEPB01041336.1:99-4948[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 8.2e-05 0.01 16.7 0.1 2 23 699 720 698 720 0.97 2 11 0.47 58 4.9 2.8 1 19 726 744 726 745 0.91 3 11 0.17 21 6.3 0.9 1 23 752 774 752 774 0.97 4 11 3.5e-05 0.0043 17.9 1.6 3 23 783 804 782 804 0.98 5 11 0.0017 0.21 12.6 2.0 1 23 811 834 811 834 0.95 6 11 5.8e-05 0.0072 17.2 0.7 1 23 840 863 840 863 0.94 7 11 1.1 1.3e+02 3.8 1.1 2 23 871 891 871 891 0.90 8 11 8.5e-08 1.1e-05 26.1 2.1 2 23 897 918 896 918 0.97 9 11 7.1e-06 0.00089 20.1 0.2 1 23 924 946 924 946 0.98 10 11 0.00039 0.048 14.6 2.6 2 23 958 980 957 980 0.95 11 11 0.0048 0.6 11.2 2.5 1 23 986 1009 986 1009 0.96
Sequence Information
- Coding Sequence
- atgtCAAATCTTGAAATCAACAAGCGTGATCACAACTACAGTGAATCGAAACCTCAACATGCCAACAATGGTACTGGTACCATTAGCAAAATATCTCAGACAGGATCTATTGTGGGTCAAATTCGAGACATAGATGAGCTGAAGAAGATTGCGCCTCGTGTTCGTTTACAGGATACCGAGAGTTTAAATGAGTTGACAAGGATTTCGTCGTTAAGTAACAGCAAGTCACAGCAAAATGATACATCCGTTCTTGAAAGGACACGgcaagaattaagaaaatattgccGTACCTGTGCTGGCCTAAAACTGCCTTtgGTGGACATCTTTAGTGAAAAGGGTATCAAATTGAGATTGAGTCAGCAAATCAAGCATCTCGAAGTTAATCCTTATGATAGTAGTCTGTCCACACAGATGTGCATGGACTGTATCTGTGACCTTAGAAtgagttataaatttttcatgcagaTAAAAAAAGCTGAGATAAAACTAAAATCTATCCATGTTAATCTCACGACTGATAATGCTACGAAGAAGGTAACATCGATCGATGATTCTTTAATAGTAAAAGAGGATAAGCAACTATCCTATTCAGAAATAAAACCAGAATATCAATTACCTTCCGCAATTCAACAAAATCCATCTTCATTATCAACAGAGCACGTTAACCAAGTAATTCCTGAAAATCAAATAGATGATTCAGTTCCCAAAATCTGTGCCATTTTTTCATTGAACGAATCAAAAATGAGACAGGACTTTGAAATTGAGAAGGAAACAGAGAaggaaaaggaagaagaagaagataaagaCACCGTGGAGAAAGAGATGATACAAATAGGAGGAGGGATATTCGAGGAAGTGGCAGAAGGAGAAGATGAAGAATCTATTGAGGAATTTGATCCTGAAGACCCTGCGCTCCTGGTAgatgaagaagaggaagaagaaaaatcccTAAAAACTGTCTACAAGTATGATATGGCAGCAGATTCTTATGTGAGAGTGGAAGGAAATGAGGGAATTTCTGTGAAATCTGAAGTCTCCCAGACTTCAGAAGGTGAAAGTCAAAAAGAGGGAATGTGGCAACCGaatatcttgaaaagaaaattaataccaATGATATCGAATAATGGAGGGGAAGATGAGATTCAAAGTATAGTAGAGAAGCATAAAGTGCAGAAGTTAGATACGAACAGTctcttaaatatgaataatccTTCAGAAGAAGAAGGAATTATGTACGTAACTGTGAAGGGATCCAAGCCGAACGAAATTCTTCTGGTAAAAGTAAGTGTCAAGAAAATGGACAAACCCATGGAACCAAAGCGCGCAGTAGTACCAGTCTCCGCTGATCTCAAGCCTGTTGAACGTTTTCTCAAACGTTACGAAACACTGACGAAGGATTTTTCATCTCGACGCCCCGACGCTCGTGAACAAATAATTGAGGAACAAATCGaagaatacaaaaagaaaCGAGAAAAAGTTCTTGGAAATCAGGCGGCGGTAACGTATACCATGAACGAAACACAAAAAGAAGttcaagaagaagaagacatttctatcaaatcaaattttgaaaaaacggAAGAAGAAATGATAGCTATAAAAGAAGAggatgaagagagagagacgaagaaagaggagaaaatgaaaaataaggaggaaaaagaaataaaagaagacgAAGAGAAgccgaaagaagaaaaaatggaGAAAGATGTAAAGATTGAGAAAGGTCAAGAAAGGATTAGTGATAATACAGAAGAACATTCAAAGTTGTcgagaatgaaaaaattggaaGAGACAAAACGGAAAAAGGAAAGTTTGCAAAAGGAACTAGACGAATCATGTAACGAAgagaatttggaaaaattagcAAAAGTCTTGGAGAAAACAGAAAATCTGCaggAATTTCTAGAATATCTAAAGCAGCGTAAAATCATTCTTGCTCGCCTCAAGGACGAAGATATAATCTCCCTCTATGAGGATCGATTTTccacaattataaaatcatcatcAAAATCGCTTCCAGATCTTATGGATACTCAACATCCTTCCGGTCTTCTTTTCGATCTTGTTTCTGacgaagataattatttagaatgtgATTATTGTTCCGAAACCTTCCCCAATCGCGATCTCCTTGAAGGACACTTAAAATCTCACGATTACCGTATCCTTCATTGCTGCGATGATTGCGGGGAAGAATTTCAGACTAATAAAGCGAAAAGAAATCATAATGtgatttgtgtaaaaaaattcatttgcaaATATTGCGAAATAGTCCTAGATTCCAAAGGAAAAAAACGTCAACATGAACAAAAACACGTTGATACTCTTTATGGTCAACTTTGCGAGATTTGTGGTGAAAGATTCAAACATCAAGGAACTCTGGACCAGCATCAGAAGACGCAACACACGAGTTTGGAGAAGATTTATCAATGTCCAAAGTgtccaaaaaaatttgctttcaaacaaaaattgagCTTTCATCTAAAATCTGTTCACACTACTTTAAGAGCATATCTTTGCGAGGATTGCGGTGCGGATTTTAAGAATCCCGCAAGTTTAAGACATCATAGAATCAGAAAACATCAACCGGTTGGAAATAAGAGAGAATGTCCAGTTTGCAGAAAATTGGTGCCGTTTTACAGTTTGTCAAAACACATGCATACACACAAAGCTTACAGTATCCAGTGTCCACATTGCgataaaatgttcaaaaacaGCTCGACCTTGAAACAACATGTGAGAATTCACGAAGATCAAAGACAGTTCCGTTGTGATACTTGCGGCGTTGGATTTAATCGGAGGGATGGTTTGAGGCTGCATTTAAGAGTGCACGAAAAAACTGGAAGTAGAGGGTTGAAAGAATGTTCCTGCCAAGTTTGTGGGGAAAAGTTCCCGAATCATTCGACTTTGGTAATTCACAGGAATAGAGAACATAAGGATGGAAAGCAGTATACGTGTCATATTTGTAATAGATCAATGATTTCGACGAGATCGCTCGAGTGGCATATGTCACATATTCATAACCAGTTAGTACCAGGTAACATATGTTTGATGTTGTTAAATGATTTGTAA
- Protein Sequence
- MSNLEINKRDHNYSESKPQHANNGTGTISKISQTGSIVGQIRDIDELKKIAPRVRLQDTESLNELTRISSLSNSKSQQNDTSVLERTRQELRKYCRTCAGLKLPLVDIFSEKGIKLRLSQQIKHLEVNPYDSSLSTQMCMDCICDLRMSYKFFMQIKKAEIKLKSIHVNLTTDNATKKVTSIDDSLIVKEDKQLSYSEIKPEYQLPSAIQQNPSSLSTEHVNQVIPENQIDDSVPKICAIFSLNESKMRQDFEIEKETEKEKEEEEDKDTVEKEMIQIGGGIFEEVAEGEDEESIEEFDPEDPALLVDEEEEEEKSLKTVYKYDMAADSYVRVEGNEGISVKSEVSQTSEGESQKEGMWQPNILKRKLIPMISNNGGEDEIQSIVEKHKVQKLDTNSLLNMNNPSEEEGIMYVTVKGSKPNEILLVKVSVKKMDKPMEPKRAVVPVSADLKPVERFLKRYETLTKDFSSRRPDAREQIIEEQIEEYKKKREKVLGNQAAVTYTMNETQKEVQEEEDISIKSNFEKTEEEMIAIKEEDEERETKKEEKMKNKEEKEIKEDEEKPKEEKMEKDVKIEKGQERISDNTEEHSKLSRMKKLEETKRKKESLQKELDESCNEENLEKLAKVLEKTENLQEFLEYLKQRKIILARLKDEDIISLYEDRFSTIIKSSSKSLPDLMDTQHPSGLLFDLVSDEDNYLECDYCSETFPNRDLLEGHLKSHDYRILHCCDDCGEEFQTNKAKRNHNVICVKKFICKYCEIVLDSKGKKRQHEQKHVDTLYGQLCEICGERFKHQGTLDQHQKTQHTSLEKIYQCPKCPKKFAFKQKLSFHLKSVHTTLRAYLCEDCGADFKNPASLRHHRIRKHQPVGNKRECPVCRKLVPFYSLSKHMHTHKAYSIQCPHCDKMFKNSSTLKQHVRIHEDQRQFRCDTCGVGFNRRDGLRLHLRVHEKTGSRGLKECSCQVCGEKFPNHSTLVIHRNREHKDGKQYTCHICNRSMISTRSLEWHMSHIHNQLVPGNICLMLLNDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -