Basic Information

Insect: Atta texana
Gene Symbol: -
Assembly: GCA_004480015.1
Location: QEPB01014831.1:772-2570[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 5.4e-06 0.00067 20.5 1.7 1 23 69 91 69 91 0.97

2 9 0.0013 0.16 13.0 3.7 1 23 93 116 93 116 0.97

3 9 0.0074 0.92 10.6 3.6 1 23 121 144 121 144 0.95

4 9 3.6e-05 0.0044 17.9 3.0 1 23 150 173 150 173 0.96

5 9 0.0053 0.66 11.0 0.8 3 23 181 202 179 202 0.95

6 9 0.00023 0.028 15.4 0.2 1 23 207 229 207 229 0.97

7 9 2.7e-06 0.00034 21.4 0.1 3 23 237 257 235 257 0.97

8 9 1.4e-06 0.00018 22.3 0.1 1 23 263 285 263 285 0.98

9 9 0.00069 0.086 13.8 2.1 1 23 291 313 291 313 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	5.4e-06	0.00067	20.5	1.7	1	23	69	91	69	91	0.97
2	9	0.0013	0.16	13.0	3.7	1	23	93	116	93	116	0.97
3	9	0.0074	0.92	10.6	3.6	1	23	121	144	121	144	0.95
4	9	3.6e-05	0.0044	17.9	3.0	1	23	150	173	150	173	0.96
5	9	0.0053	0.66	11.0	0.8	3	23	181	202	179	202	0.95
6	9	0.00023	0.028	15.4	0.2	1	23	207	229	207	229	0.97
7	9	2.7e-06	0.00034	21.4	0.1	3	23	237	257	235	257	0.97
8	9	1.4e-06	0.00018	22.3	0.1	1	23	263	285	263	285	0.98
9	9	0.00069	0.086	13.8	2.1	1	23	291	313	291	313	0.97

Sequence Information

Coding Sequence: GGTTCACCTGTGGATCCTCTGGTCATGGACGCCAATAATGTGGAACACTTGTCCGAAACCATAGAATGCTTACCTGAGTACGACTTATTAccaaataaaatcaaacgaTACATCGctaggagagaaagaaaaataaaagaagatacgAGAAAACAGAGCAAAATCAGtcagaacaaaattaataaaaagaaacctAAACTTTCTTTCGAGTGCGCCACATGCGGCCAATGTTTTAGTCAGAAAGCTACCATGATAAAACACATGAGCTTGCATAAATATCAATGCCAAACTTGTTGCCAGAGCTTTAGCCTGAAGCGAGAATTGAAGCGCCATATCATGAATGTTCATGGACCTCTCCTGTATCCATGCAGCATCTGTGACTACAAGAGCAACAACAAATGCACCTTAAAGGATCACTTTATACGGAAACACACTAGCGGCTTTCAGCATTCTTGTACGGTTTGCAATAAGcagttcaaaataaaaaacgatcTGAAACAACACATGAATCAAGTTCATAGTGGTGAACCGCCCATCATCTGCAGCATCTGTGGACACGCTTGCAAGAATGTTCCCGCTATCAAGGCGCACATGAAGTATCGACATTACAAACCGGCTTACGAATGCAAAATATGCAAGCGTGGTCTTACCACTCAAGAATATCTCGATCAACACTTGATCTGGCATGAAAGAAAGGAGAAGGTCATCTGTCCCACCTGCGGCAAAACCTTCGGTCAGAAGAGGGACTTGGACCTTCATTTGAGGATTCATCAGGGTATCCGACCGTTCTCTTGTCCAGTCTGCGGCAAAACCTTTCCCCGAAAGACCGCACAAGAACAACACATATTAATTCACACCGGCAAAAAGCCGTATATCTGCGACATATGCGGACACACCTTTGCGCAGAAACCCGGACTTATTTGTCACAGGAAACGGCATCCTGGACCGTTACCACCCTTGCCTGTGGTAtccattaagaaaataatcatgGAATTTACACAAGAATTAGTCTCTTCTACGCAACAAGATAAAGTAGATAgctaa
Protein Sequence: GSPVDPLVMDANNVEHLSETIECLPEYDLLPNKIKRYIARRERKIKEDTRKQSKISQNKINKKKPKLSFECATCGQCFSQKATMIKHMSLHKYQCQTCCQSFSLKRELKRHIMNVHGPLLYPCSICDYKSNNKCTLKDHFIRKHTSGFQHSCTVCNKQFKIKNDLKQHMNQVHSGEPPIICSICGHACKNVPAIKAHMKYRHYKPAYECKICKRGLTTQEYLDQHLIWHERKEKVICPTCGKTFGQKRDLDLHLRIHQGIRPFSCPVCGKTFPRKTAQEQHILIHTGKKPYICDICGHTFAQKPGLICHRKRHPGPLPPLPVVSIKKIIMEFTQELVSSTQQDKVDS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00869092;
90% Identity: iTF_01421743;
80% Identity: -