Basic Information

Insect: Atta texana
Gene Symbol: -
Assembly: GCA_004480015.1
Location: QEPB01027678.1:2556-7695[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.081 10 7.3 0.4 6 21 12 27 6 28 0.86

2 14 0.47 58 4.9 0.3 2 22 34 54 33 57 0.88

3 14 2.8 3.5e+02 2.5 0.4 1 12 237 248 237 257 0.88

4 14 0.018 2.2 9.4 1.9 1 20 366 385 366 387 0.95

5 14 2.5e-05 0.0031 18.4 0.6 2 23 392 413 392 413 0.97

6 14 0.00074 0.092 13.7 5.6 1 23 424 446 424 446 0.98

7 14 0.003 0.37 11.8 0.1 1 23 465 486 465 486 0.93

8 14 0.00087 0.11 13.5 0.0 2 23 492 513 491 513 0.95

9 14 7.9 9.8e+02 1.1 0.6 9 23 520 534 519 534 0.94

10 14 1.7e-06 0.00021 22.0 3.7 1 23 540 562 540 562 0.96

11 14 0.0002 0.025 15.5 4.1 1 23 568 590 568 590 0.97

12 14 1.2e-06 0.00015 22.5 0.8 1 23 596 618 596 618 0.98

13 14 2.5e-05 0.0031 18.4 0.2 1 23 622 644 622 644 0.99

14 14 0.00059 0.073 14.1 0.2 1 23 652 674 652 674 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.081	10	7.3	0.4	6	21	12	27	6	28	0.86
2	14	0.47	58	4.9	0.3	2	22	34	54	33	57	0.88
3	14	2.8	3.5e+02	2.5	0.4	1	12	237	248	237	257	0.88
4	14	0.018	2.2	9.4	1.9	1	20	366	385	366	387	0.95
5	14	2.5e-05	0.0031	18.4	0.6	2	23	392	413	392	413	0.97
6	14	0.00074	0.092	13.7	5.6	1	23	424	446	424	446	0.98
7	14	0.003	0.37	11.8	0.1	1	23	465	486	465	486	0.93
8	14	0.00087	0.11	13.5	0.0	2	23	492	513	491	513	0.95
9	14	7.9	9.8e+02	1.1	0.6	9	23	520	534	519	534	0.94
10	14	1.7e-06	0.00021	22.0	3.7	1	23	540	562	540	562	0.96
11	14	0.0002	0.025	15.5	4.1	1	23	568	590	568	590	0.97
12	14	1.2e-06	0.00015	22.5	0.8	1	23	596	618	596	618	0.98
13	14	2.5e-05	0.0031	18.4	0.2	1	23	622	644	622	644	0.99
14	14	0.00059	0.073	14.1	0.2	1	23	652	674	652	674	0.97

Sequence Information

Coding Sequence: ATGGGCACGCTGAACCTCATCTGTCCCATGTGTTGCGGAGAGACCTTCAATAATACTCAGTCCCTTAAATACCACTTGCTAAGCATGACAGACAATCTCTATTGTCCGGGCTGTTCGCAGCGTTCCGACTCTGTGACGGCGCTCATTCAGCATCTGGACATGTGCGAGCACGATTTAAGGTATAGGATGAAGCCCGAGATTCTTACGGACAAGCTCAGAAAAGGCGGAAAGGAGCCTGAAATCAAAATGGATCTGTTATTGgaTGTCAAGGGACAACAGCTCAATCGAGGCTTCCTGGCAACCATGGCCAACAATGGAGTAGTCATAATGAGTGACCCACAAACAATACAAATGGACGAGAATGGAGAGATTAAAGTCGTAGAAAAGATGGACACGGAAGAAACGCAACCAGATCAAAATTCTCTGGATTTCAAGATGTCCGAAGGACTCATCGGCGACGTTGGTGGAGCGCAAAGAAGACTGCAGTCATCACAAGGATTGGTGGCTATTCCCATATCAAATCCAGACCGCAAGGCGTTGATGGAGAAGAACATAATCGCTGTGTTACCAGATAACTCCGAGCTCCTGGATGGGACTGAGACCGCTACCCTGATCGATGTGGATCGTATAAATGAGGCAACGGAGATCGACGAGGTTGATCTTTTGCGTGTCAAGCGAGAGCTGTGCGAGTTTGAATCTGACGCTGTATACAGTTGCACCAGTTGCGAAATGAGCTTCAACTCCGTCTTGGATCACATCAAGCAATTCCACGATGGCCAGGAGGTTTTGCTAGAGATGGCGGAACAAATGAACGATCTTGCGACGACAAGTCCGGCGGTATCCGAAAACTCGGAGAATGTGGTGAATCCACGGCAGCGACAAACGATGAACACACTGCGCACGGAAGAATGTGTGGACAGTGAGGGTAGGCTCTACACCAGAAAAGTGGTGCAAATTGAGAGATTCTGGGACCGTACTCCGGTTCAGGTCACGACGCCGCAATCGGTGAAGGCTCCGATGATCGAGAAATTCTTTTCGAACGTGGAGGGTGTCAAGGTACGAGACAAACGCCTGGCGACCGCATCGGTGCGAATGTACAAGTGCAATCAATGCCTGCAGCAGTTCTCCAAGTTGGGTAACTTTCGCGTGCACGCCTGTCTCGGTGGCAATAATCGTTGCGAACACTGCGACCAGAGCTTCGCGACACCCAGGGCTTTGCAACTCCACGCGAAGGTGCACGATGGCGAAGCCGATTCGAACCAGAAGACGTTTGTCTGTACTACGTGCGGTACCGAATTTTGTTCCCACAAAAGCCTACGGCTGCACTCGAGGATGCACGCGCCAGTGAGAGCCAGACATGTCGATGCACCCGAGGGCACTCCTAACGCAACTTTCACTTGCCCCGAATGCGGCAAAACGCTCTCCGAGTCGTACAAAGAAGCGCATATGGCGCTGCATACAGGTGACTCAGTGACGTGCACCGTTTGCAACCGGAAGTTCGATTCCGCGGAAAGTCTAGCAATGCACGCGGCGGTGCACGTCGAGCAGACACCCTCGCGATTCACTAGACCACATGAGAAAGTCAAGCACGAACGAATTCACACTGGGGAGAAGCCGCATGCTTGTGAGGTTTGTGGCAAGACCTTTCGTGTGTCCTACTGCCTGACCCTTCACATGCGCACGCATACAGGCGTGAGGCCCTACGCTTGTCAGCATTGTGGAAAGCGCTTTAAGGCATCTTCCGTCTACAATCATCACCTGCTGACACACGGCGAGGAGCGTGCCTACACATGTCCATACTGTCCAAAGACGTTCAAAACGCGAGTGCAGCTGGCCGGTCACAAGAACAGCCACACGAAGCCATTCCGGTGCACCGAGTGCTCGCGGCCGTTTGCATCGCTCTATGCCGTCCGCGCGCACATCCAGACTCATAAAAAAGACAACAATCTTAAGTTTAGCTGCTATGTATGCGGCGCATCGTACGGTCGGGCGTTCGCCCTCAAGGACCACCTGAAGCAACACGGCCAGGACGTGCTGGCGCTACCGGAGCCAGCGCGAGAGGAGGAGGTGCACGAGAATTTCCTCCTCGGCGAGGAGGAGATCGAGGAGGAAGAGTTCGCGGCCCCAACGCTGCCACCACCGCCGACTCCGCTTCCCGTCATCGCGCGCCCCTCCGGCGTGGACGACACCGACTGA
Protein Sequence: MGTLNLICPMCCGETFNNTQSLKYHLLSMTDNLYCPGCSQRSDSVTALIQHLDMCEHDLRYRMKPEILTDKLRKGGKEPEIKMDLLLDVKGQQLNRGFLATMANNGVVIMSDPQTIQMDENGEIKVVEKMDTEETQPDQNSLDFKMSEGLIGDVGGAQRRLQSSQGLVAIPISNPDRKALMEKNIIAVLPDNSELLDGTETATLIDVDRINEATEIDEVDLLRVKRELCEFESDAVYSCTSCEMSFNSVLDHIKQFHDGQEVLLEMAEQMNDLATTSPAVSENSENVVNPRQRQTMNTLRTEECVDSEGRLYTRKVVQIERFWDRTPVQVTTPQSVKAPMIEKFFSNVEGVKVRDKRLATASVRMYKCNQCLQQFSKLGNFRVHACLGGNNRCEHCDQSFATPRALQLHAKVHDGEADSNQKTFVCTTCGTEFCSHKSLRLHSRMHAPVRARHVDAPEGTPNATFTCPECGKTLSESYKEAHMALHTGDSVTCTVCNRKFDSAESLAMHAAVHVEQTPSRFTRPHEKVKHERIHTGEKPHACEVCGKTFRVSYCLTLHMRTHTGVRPYACQHCGKRFKASSVYNHHLLTHGEERAYTCPYCPKTFKTRVQLAGHKNSHTKPFRCTECSRPFASLYAVRAHIQTHKKDNNLKFSCYVCGASYGRAFALKDHLKQHGQDVLALPEPAREEEVHENFLLGEEEIEEEEFAAPTLPPPPTPLPVIARPSGVDDTD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00126922;
90% Identity: iTF_01476438;
80% Identity: -