Basic Information

Insect: Atta texana
Gene Symbol: topi_1
Assembly: GCA_004480015.1
Location: QEPB01017907.1:9768-11474[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.0035 0.43 11.6 2.3 1 23 89 111 89 111 0.95

2 15 0.086 11 7.3 1.4 2 23 118 140 117 140 0.95

3 15 0.0021 0.26 12.3 0.3 2 21 147 166 146 167 0.92

4 15 0.00011 0.013 16.4 1.0 1 23 174 196 174 196 0.96

5 15 1.5e-06 0.00019 22.2 3.2 1 23 202 224 202 224 0.98

6 15 0.0048 0.6 11.2 7.5 1 23 274 296 274 296 0.98

7 15 2.5 3.2e+02 2.6 0.2 1 23 302 324 302 324 0.90

8 15 0.13 16 6.7 1.1 1 23 334 357 334 357 0.92

9 15 0.18 22 6.3 0.0 1 21 371 391 371 392 0.90

10 15 0.0033 0.41 11.7 0.1 1 23 397 419 397 419 0.98

11 15 1.5e-06 0.00018 22.3 3.1 1 23 425 447 425 447 0.98

12 15 9.3e-05 0.012 16.6 0.3 1 23 453 476 453 476 0.97

13 15 0.035 4.4 8.5 0.7 1 23 482 504 482 504 0.89

14 15 2.3e-07 2.9e-05 24.8 2.2 1 23 510 532 510 532 0.99

15 15 1.8e-05 0.0022 18.8 6.0 3 23 540 561 538 561 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.0035	0.43	11.6	2.3	1	23	89	111	89	111	0.95
2	15	0.086	11	7.3	1.4	2	23	118	140	117	140	0.95
3	15	0.0021	0.26	12.3	0.3	2	21	147	166	146	167	0.92
4	15	0.00011	0.013	16.4	1.0	1	23	174	196	174	196	0.96
5	15	1.5e-06	0.00019	22.2	3.2	1	23	202	224	202	224	0.98
6	15	0.0048	0.6	11.2	7.5	1	23	274	296	274	296	0.98
7	15	2.5	3.2e+02	2.6	0.2	1	23	302	324	302	324	0.90
8	15	0.13	16	6.7	1.1	1	23	334	357	334	357	0.92
9	15	0.18	22	6.3	0.0	1	21	371	391	371	392	0.90
10	15	0.0033	0.41	11.7	0.1	1	23	397	419	397	419	0.98
11	15	1.5e-06	0.00018	22.3	3.1	1	23	425	447	425	447	0.98
12	15	9.3e-05	0.012	16.6	0.3	1	23	453	476	453	476	0.97
13	15	0.035	4.4	8.5	0.7	1	23	482	504	482	504	0.89
14	15	2.3e-07	2.9e-05	24.8	2.2	1	23	510	532	510	532	0.99
15	15	1.8e-05	0.0022	18.8	6.0	3	23	540	561	538	561	0.95

Sequence Information

Coding Sequence: ATGAATACGTGTGAGGAGACATTACAAAATGCGAAAGATAAGGAATTATATGAGAATGATATAATTCTAGAAAGCAGTGATGaggagaatatttttaataacgcaAAGGTCAGTAAAGAAAGCGGAAATCATTCTATTATATTGCAATGTTTAGGAActaaacagaaatatttaaaatgcggAGCATGTATGAATCTTTATCACACCGAGGAAACACTAGATGGTCATAAGTGTAAGCCTAATGTACAGAACACAACAAAACCGTACAAATGTCTCGTATGTGATAAGACATTTACTTTCGAGGAGCGATTGAACTTTCACATGCAATTTCACAAAGGTGCGAAAGCATTATACTGTGAGGTCTGCAAGATGACGTTTGGTAAAGAGCTGAAGTTGTTTTACCACTATAAGAGACAACATTCCAAGGAAATTAGTGTATCGTGTCTACAATGTGGAAAGTTATTTGAGAATCAGGAGACACTCCGAGTTCATGTTTGCGTCGACGGTAAAAATCGCCCTCATATTTGTGAAGTATGCAACAAAGGCTTTTTTGACGGCTATACCCTGAAGCGTCACATAGTGACACATCTGCCCGAGAAGCCTTACAAGTGCTCGGAATGTTCGAAAAGCTTTACACAAAAATCAAGATTGAACAAGCATGTCACGAGCCATTGCATAATTATCGAGAACAATCAGACGGTCTGGAAATGCATCCAGTGCGGTGAAGCACTCATCTCTTGCGATGATGCAGATATTCACTATAAGATAATACATGAAGACAAAATCACACTGATTGAAGAACTATCAATATCAAAACTATATCATTGTGAGTTTTGCAATAGTCATTTCATCAACGCGGACAACTTGAAGACTCATCAAAAACATCATGTTGTCGAAAGACCCTATACGTGTAATACGTGCATGGCCACTTATAAATCATTCGCTGAAGCTGTTTTACATTGGAAGGAACATCCTAGACTGTTTAAAGTCCTCGTcgtttttttatgtgatatcTGCAACAAGGACATGAAAGAATTATCCTTGCTATACAAACACAAGCAAAATAGGCATAACCGTGAATCCAGATTATCCGAGTCGGGCAACGCAAAGTTTATTTGCGAACTCTGTGGGAGTGTCTTCGACAAATATGAGGATATAAAGGATCATGGACGAGATCAATGTTCCAAATTCCCCTGCGATATTTGTGGCAGCCTACTGCCTACAGCAAACTCGTTAAACGCACACAAAAGGCGGCATAATGGATTGAGACCATATGTCTGTAATATTTGTGGAAAGAGTTACACTCAATCCAGTCATATGTGGACTCACAAGAGATTCCATATGGGTATCAAGCCATACGCTTGCGAATATTGCGATCAACGTTTTACCATAAAGCCAGACTTAGCGGATCATGTTAGGAAGAAGCATACGAGAGAGAGACCATTCAAATGCGACGTGTGCAATAAGGCTTTCCTGACTGGGTCCGTGTTTTATCAGCACAGATTGATACATCGTGGCGATCGCAGATACAAGTGCCATTACTGTGAAAAGGCTTTCACTAGAACGGAAGCTTTGAACAACCACATTAAGATACATACGGGGGAAAAGCCACATTTGTGCGACGTATGTGGCAGATGCTTCAGACAGAAAGGAGATATGAGAAAACACAGACGCACCAAGCATGCTTCCGAACAAGATAAATCTTGA
Protein Sequence: MNTCEETLQNAKDKELYENDIILESSDEENIFNNAKVSKESGNHSIILQCLGTKQKYLKCGACMNLYHTEETLDGHKCKPNVQNTTKPYKCLVCDKTFTFEERLNFHMQFHKGAKALYCEVCKMTFGKELKLFYHYKRQHSKEISVSCLQCGKLFENQETLRVHVCVDGKNRPHICEVCNKGFFDGYTLKRHIVTHLPEKPYKCSECSKSFTQKSRLNKHVTSHCIIIENNQTVWKCIQCGEALISCDDADIHYKIIHEDKITLIEELSISKLYHCEFCNSHFINADNLKTHQKHHVVERPYTCNTCMATYKSFAEAVLHWKEHPRLFKVLVVFLCDICNKDMKELSLLYKHKQNRHNRESRLSESGNAKFICELCGSVFDKYEDIKDHGRDQCSKFPCDICGSLLPTANSLNAHKRRHNGLRPYVCNICGKSYTQSSHMWTHKRFHMGIKPYACEYCDQRFTIKPDLADHVRKKHTRERPFKCDVCNKAFLTGSVFYQHRLIHRGDRRYKCHYCEKAFTRTEALNNHIKIHTGEKPHLCDVCGRCFRQKGDMRKHRRTKHASEQDKS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00014901;
90% Identity: iTF_00014901;
80% Identity: -